Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00662 ATGGCTTTAAGGAGTAGGATTTTGGAGCGAGGAATTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTGGTTTCTGGAGTTTCGACGGCGGCGAGAACGACGGAGGAGTGCAATTTATTCGTCGGAAGTTGGGTTGTTGACGAGACTTACCCGCTGTACACGGCGGTGAGTTGTCCTTTCGTGGAGCACGAGTTCAGCTGCGTCAAAAATGGCCGTCCCGATTTAGGTTACACCAAGTACAGATGGCAGCCTCTCCATTGCGATTTATCCAGGTTTGATGGAAAACTTTTCTTAGAAAAACTTAGGGGCAAACGTATACTATTTGTGGGAGACTCACTTAGTCGGAATCAATGGCAATCTTTGACATGCATGCTTCACTCGGCTATTCCAAATGCACATTATACTTTGACAAGGGTCGGAGATGTTTCCACATTCACTTTTACGGAGCACAAAGTGGAAGTGATGCTCGAGAAAAATGTATATCTAGTAGACATTGTAAGAGAAGAGATTGGAAGAGTGTTGAAATTAGATATAATTAATGAAGGATCGAGTAAGCTATGGCAAAGCGTCGACTTTCTCATTTTCAATACTTGGCACTGGTGGAATCGCAGAGGATCTTCTCAACCTTGGGATTATATTGAAGTAGGGAAAGAGGTGTTGAGAGATATGGATAGAATGGTAGCTTTTGAGAAGGCTCTCACAACTTGGGGAAGATGGGTTGATCTCAACATTGATCCTCAAACAAATAATGTCTTTTTCCAAGGAATTTCTCCATCCCATTACAATGGAAGTTTATGGGGAGAACCAAGAGCAAAGAGTTGCATAGGTCAAAACGAACCGGTGGCAGGATCGGTGTACCCGGGTGGTTCACTGCCGGCGGTGGCCGTGCTGAAGGCTGCGCTAAGCAAAATCACAAACCCCGTTCACCTTCTGGACGTAACAGAGTTATCACTGCTGAGAAAAGATGGGCACCCCTCCAAGTATGGCTTAGTTGGCAGAACCGGATTGGACTGTAGCCATTGGTGCCTCGCCGGCGTTCCTGATACTTGGAATCTCTTATTTTACAATCTCATTATTTAA 1089 44.54 MALRSRILERGIPLLLLLLLLLLLFLVSGVSTAARTTEECNLFVGSWVVDETYPLYTAVSCPFVEHEFSCVKNGRPDLGYTKYRWQPLHCDLSRFDGKLFLEKLRGKRILFVGDSLSRNQWQSLTCMLHSAIPNAHYTLTRVGDVSTFTFTEHKVEVMLEKNVYLVDIVREEIGRVLKLDIINEGSSKLWQSVDFLIFNTWHWWNRRGSSQPWDYIEVGKEVLRDMDRMVAFEKALTTWGRWVDLNIDPQTNNVFFQGISPSHYNGSLWGEPRAKSCIGQNEPVAGSVYPGGSLPAVAVLKAALSKITNPVHLLDVTELSLLRKDGHPSKYGLVGRTGLDCSHWCLAGVPDTWNLLFYNLII 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3373405 3375506 - CmaCh04G006620.1 Cma04g00662 291743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00662 362 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 18 361 IPR029962 GO:0016413
Cma04g00662 362 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 41 18 361 - -
Cma04g00662 362 Pfam PMR5 N terminal Domain 38 91 IPR025846 -
Cma04g00662 362 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 92 359 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00662 - - - csv:101208056 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00662 Cma-Chr4:3373405 Cma18g00403 Cma-Chr18:2203356 1.31E-133 dispersed
Cma04g00662 Cma-Chr4:3373405 Cma20g00223 Cma-Chr20:1074791 1.23E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g38 . . . . . . . . . Cmo04g00710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00662 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013547 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 2 1 2 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00662 Cma_Chr04 FPKM 5.771523 5.691532 2.087324 2.686369 16.541952 19.255566 16.366718 0.0 0.0 0.0