Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00666 ATGACGCTCAAGGAGATCAAGGAAGGCGGAGATATAGAAACAGACCCTGCCGCTGCGCGAAGAAGAGTCAAACGCGACGGAAAATCGCGCGGATCGATTGAATTAGCCGAAGAGCCGAATCAAAACTCCATAGCTACTGATTCTCTCACTACCCATCTGCAGAAAATGGCAGAAATCGGACCATTGATTAAACACTTGTCTTCTATTGTCAAATGGACTAGGTCTTCATATAAAGCCCCCCCATCAGATGGTAATGTCCTGCAATTTGAGAATGGGTACTTGGTTGAGACTGTAGTGGAGGCAAATGAAATTGGAGTTCTTCCACATAAGATCCATGTCTCAAAGGAGGGCGAGCTTTTCGTCGTTGATTCGGTTAATAGCAATATTGTGAAGATCACCCCTCCATTATCCAAATATACTCGAGCAAGATTGGTTGCTGGGTCATTTCAAAGCCACACGGGGCATGTTGATGGAAAACCAAACGACGCCCGTTTTAATCATCCAAAGGGTGTAACCGTGGACGATAAAGGGAATGTGTATGTTGCTGATACCTTGAATTTGGCCATCAGAAAGATTGGAGATGCTGGTGTGACAACCATTGCAGGGGGCAAGTCAAATGTCGCAGGCTACAGAGATGGACCAGGTGAAGATGCGAAGTTCTCAAACGATTTTGATGTAATGTACATCCGTTCTACTTGTTCCTTGTTAGTTATTGACCGTGGAAATGCTGCGATTCGGCAAATATTTCTAAATCCGGAGGATTGTGAATATCAAGATAGTTCAATTTCCAACAGTGATGTTCTCATGATCATTGGTGCTGTTTTGGCGGGATACGCAACGTATATGCTTCAACAGGGTTTTGGAGCCTCGAGCATGTCTCAGACATATTCTCCATTAGAGACTGAGTATAGGGAAAAACCAAACAAGGAAGAATCGACCTTGACTGTGGATAGTGTAAGGGAGACACCAGGATGGCCATCATTTGGACGACTCATCATTGATCTCTCCAAACTGGCTCTTGAAGCCGTGGCTAGCATTTTCCTTTCTTTTGTTCCTGCCCGTTTCAGAGCTCGTAACATCCCGAAAGGCCTGACCCCGTTGAAAGATTCTCTCTGGATGCCTGAAGATGAACCCGATCGACCACCAGCTCAAATGCAGAGAGCTCCTGTTCCTCTGACTGAAACAAGACAAGCTCATATAGGCAATGCAAATGATCAAGTTCCTGAGGTGATGATGAAGCCTCCAAAGCTCAAATCAAGTAGTTTCAAAGATCCCTCACTGCAAAGTAAGCACCGATCGAAACGTCACGACCGTGCTGATTTTTACGAATCTGGTGAGATACCTCCACCTTATAGCAGGTCCAAGAGCCAAAAAGAAAGACCACGACACCGCCAGCGCGAGAAAAGTGCAGAGATCCATCACGGAGCTGCAGGACCTGAGCCAAAGCCCATGGAGATGAAGCCAGTCAATTACGACAATTCAAACTTGGAACATTACAACATCAGGAATAAAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCCTCCTCCTCCTCCTCCTCCTCCTCTACAAAAAGCTTATTCTTCGGTTCTGCAAAATTCTTCCATTCCAACTCTCCACCGAGTTTCTGCTTTTCTCTGGCTTCGTCTTTGTATCTGTCTACTTGTAG 1671 45.3 MTLKEIKEGGDIETDPAAARRRVKRDGKSRGSIELAEEPNQNSIATDSLTTHLQKMAEIGPLIKHLSSIVKWTRSSYKAPPSDGNVLQFENGYLVETVVEANEIGVLPHKIHVSKEGELFVVDSVNSNIVKITPPLSKYTRARLVAGSFQSHTGHVDGKPNDARFNHPKGVTVDDKGNVYVADTLNLAIRKIGDAGVTTIAGGKSNVAGYRDGPGEDAKFSNDFDVMYIRSTCSLLVIDRGNAAIRQIFLNPEDCEYQDSSISNSDVLMIIGAVLAGYATYMLQQGFGASSMSQTYSPLETEYREKPNKEESTLTVDSVRETPGWPSFGRLIIDLSKLALEAVASIFLSFVPARFRARNIPKGLTPLKDSLWMPEDEPDRPPAQMQRAPVPLTETRQAHIGNANDQVPEVMMKPPKLKSSSFKDPSLQSKHRSKRHDRADFYESGEIPPPYSRSKSQKERPRHRQREKSAEIHHGAAGPEPKPMEMKPVNYDNSNLEHYNIRNKASSSSSSSSSFLLLLLLLLYKKLILRFCKILPFQLSTEFLLFSGFVFVSVYL 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3396771 3403990 - CmaCh04G006660.1 Cma04g00666 291747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00666 556 SUPERFAMILY NHL repeat 103 223 - -
Cma04g00666 556 MobiDBLite consensus disorder prediction 415 486 - -
Cma04g00666 556 MobiDBLite consensus disorder prediction 425 443 - -
Cma04g00666 556 PANTHER - 55 509 - -
Cma04g00666 556 MobiDBLite consensus disorder prediction 1 32 - -
Cma04g00666 556 MobiDBLite consensus disorder prediction 366 389 - -
Cma04g00666 556 Pfam NHL repeat 165 189 IPR001258 GO:0005515
Cma04g00666 556 MobiDBLite consensus disorder prediction 463 480 - -
Cma04g00666 556 Gene3D - 57 249 IPR011042 -
Cma04g00666 556 PANTHER NHL DOMAIN-CONTAINING PROTEIN 55 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00666 - - - mcha:111012893 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01252 Cma-Chr1:9014801 Cma04g00666 Cma-Chr4:3396771 1.35E-171 dispersed
Cma04g00666 Cma-Chr4:3396771 Cma04g02716 Cma-Chr4:18329852 4.07E-70 dispersed
Cma04g00666 Cma-Chr4:3396771 Cma15g00325 Cma-Chr15:1508929 4.72E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g92 . . . Bda09g00547 . Bpe08g00989 . . . Cmo04g00713 . . . . . . Cpe02g00663 . . . . . . . . . . . . . . Cone6ag0200 Cone9ag0231 . . . . . . . . . . . . . . . . . Cma04g00666 . . . . Cpe01g00601 . . . . . . . . . . . . . . . Csa04g00813 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002564 1 4 1 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00666 Cma_Chr04 FPKM 14.881234 15.680872 21.730436 20.540489 22.391876 21.32502 20.957327 24.253269 21.58939 21.625969