Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00669 ATGGATTCTGTTAAACCGGCACCCATGTCCTCCAAAAAGACCAAACTTGCTCGTACTTTTGCCAAAGTTCTTCACATTCGAATGCTGACCGGAGTCTCCCCGATCGGTGGAACCCCGAAAGGCGATCGGACCGTGGCTAAGAATGTCGGTAAGCAATCGGGTTCCTTTGATTGCAGTGATGAAGATCAGCAAGACAGAGCTGCAATGGAGGCTTTTCTTGCTAAGCTGTTTGCTACTACTACAGCTCTTAAAGCTGCTTATGCTCAATTGCAATATGCTCAATCTCCATTTGATGTTGATGGGATCCAAGCTGCCGATCGAACAATCGTGTCGGAGTTGAAGAGGTTGTCGGAATTGAAACGATGTTTCGTTAAGAAACAGTTTGATCTTCTGCCTGAAAATGCGATGCTGTTGGCTGAGCTTCTCGAGCAGAAGAGTGTCGTGAAAATCTATGAAGTTTCTGTTAAGAAGATGAACTCTCAGGTGAGACTTAAGGATTCTGAGATTATCTTTCTTAAGGAGAAGTTGGAGGAAGCTAAGAGTAACAATAAGATTCTTGAGAAGAGAATGAATCAAAGTGGTTCGCTGTTTATGCTCGAAAACCTTCAGCTTTCAGCTATAAACACGAATCACTTCGCTCGTGTTCTTCGGCAGACAGTTAAAACCGTTACAACTTTTGTCGAATTGTTGATTGATGAGATGAAATCTGCTGGTTGGGATATTGGTGAAGCTGCGTCTGCAATCGAACCCGACGTAGTTTACTTCAAAGACGAGCATAAACGTTTCGCTTTCGAGGCATTCGTATGCCGAATAATGTTCGAGGGGTTCCATTTCCCAAATTTCGGTCTTCCAAACGAGTCTCTACCAGAGAAGCAGCAGCAGAAGAAGCTATACTTCAGGAGATTCACAGAAGCGAAATCATTAACATGGAAAGAACTCATCGATGAGAAGCCGAAATCGACATTCGCAAAGTTCTACCGTGCGAAGTATCTGCAGCTGATCCACCAGAAAATGGAGTCGTCGTTGTTTGGAAACATGAAGCAAAGAAGGCAGGTGAGTTCAGGTGAAATCCCAGAGAGTGAATTCTTTGGCACATTTGCAGACATGGCTAGATGGGTGTGGCTACTGCATTGCTTAGCATTCTCATTCGACTCAGAGGCGTCAATCTTTCAAGTAAGCAAGGGATGTCGATTCAACGAGGTGTATACAAAAGCGGTAACGGAAGAAGTGTTGTTGCTTTCGACAGAACCCGAGCTTCGAGTGGCTTTCACAGTCGTACCCGGATTCAAGATTGGTAAAACTGTCATACAATGCCAGGTTTATATCTCTAAATCACAGCAGCAGCAACAACAACAACAACAACATCAGCTAAAACAACCTGTCCAGAAAAAAACAGAGGTGAGGTAA 1407 43.99 MDSVKPAPMSSKKTKLARTFAKVLHIRMLTGVSPIGGTPKGDRTVAKNVGKQSGSFDCSDEDQQDRAAMEAFLAKLFATTTALKAAYAQLQYAQSPFDVDGIQAADRTIVSELKRLSELKRCFVKKQFDLLPENAMLLAELLEQKSVVKIYEVSVKKMNSQVRLKDSEIIFLKEKLEEAKSNNKILEKRMNQSGSLFMLENLQLSAINTNHFARVLRQTVKTVTTFVELLIDEMKSAGWDIGEAASAIEPDVVYFKDEHKRFAFEAFVCRIMFEGFHFPNFGLPNESLPEKQQQKKLYFRRFTEAKSLTWKELIDEKPKSTFAKFYRAKYLQLIHQKMESSLFGNMKQRRQVSSGEIPESEFFGTFADMARWVWLLHCLAFSFDSEASIFQVSKGCRFNEVYTKAVTEEVLLLSTEPELRVAFTVVPGFKIGKTVIQCQVYISKSQQQQQQQQQHQLKQPVQKKTEVR 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3411419 3412825 + CmaCh04G006690.1 Cma04g00669 291750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00669 468 Coils Coil 169 196 - -
Cma04g00669 468 Pfam Plant protein of unknown function (DUF641) 65 189 IPR006943 -
Cma04g00669 468 PANTHER OS01G0203800 PROTEIN 1 442 - -
Cma04g00669 468 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 1 442 IPR040225 GO:0009639|GO:0009959
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00669 - - - cmax:111480036 870.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01253 Cma-Chr1:9023369 Cma04g00669 Cma-Chr4:3411419 1.44E-177 dispersed
Cma03g01337 Cma-Chr3:8584231 Cma04g00669 Cma-Chr4:3411419 3.08E-141 dispersed
Cma04g00669 Cma-Chr4:3411419 Cma07g00168 Cma-Chr7:825249 9.05E-143 dispersed
Cma04g00669 Cma-Chr4:3411419 Cma09g00666 Cma-Chr9:3151201 1.87E-178 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g94 . . . . Bpe09g00262 . . Bma13g00926 . Cmo04g00715 . . . Car09g00591 . Cpe06g00521 . . . . . . . . Cla11g01701 Cam11g1767 Cec11g1787 Cco11g1792 Clacu11g1926 Cmu11g1737 Cre11g2145 Cone6ag0199 Cone9ag0229 . . . Csa04g02272 Chy07g00013 . . Blo10g00729 . Bda12g00816 . . . . . . Cmo09g00649 Cma04g00669 . . . . Cpe01g00603 . . . . . . . . . . . . . . . Csa04g00812 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012596 0 3 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 3 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00669 Cma_Chr04 FPKM 3.726368 3.895594 5.799949 6.623659 2.923854 2.351317 2.628507 6.107368 5.446392 6.23721