Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00672 ATGTTTAATGGCCACTCCAAGCCCAACCAAGCCTCCCGCCCATTTTCCACTCTCTTCAATTTTCCCTCTACTAGTCTCCGACTCTGCCAAAACCCCAGCGCCAGCGGAAGAACTCGTCCTCTTCAGTTCTCCTGTTCCACAAATCTCCATTCTTCTGCGCCATCAAAATCCTTGAGAATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGTGTAGTAAGGGACTGTGTGAGCAAGCATCTCTACTCCTCCGCCATCTTCTTCGCCGACAAAGTCGCCGCTTTCACTGAGGACCCTGCGGATATTTACATGCAGGCGCAGGCCCTCTTTCTTGGACGCCATTTTCGCCGTGCGTTTCACCTCCTCAATGCCTCCAAGATCGTCCTCCGTGACCCTCGGTTTCGTTACCTCGCTGCCAAGTGCCTTGAGGAATTGAAGGAGTGGGACCAATGCCTAGCGATGCTTGGTGATGCCAAAGTGAACGAGCATGGTTACGTGCTTGATAACAAGGATCACAGTGGCATGTACCTTGACAAAGATTGTGAGGATCGTGAGATTAATATAGCCGCAGCAACATGCTTTTTAAGAGGCAAGGCATATGAAGCTCTGGAAAACCGCACGCAGGCTCGACTTTGGTACAAAGCTGCTATCAAAGCTGACCCTCTATGCTATGAGGCTTTGGAGTGTCTCATAGAAAGTCACATGCTGACATGTGATGAAGAATCAAGTCTACTCTCATCATTGCAGTTTGGTCCTGAAGATGGATGGCTCTCATCATTTTATGCATGCTTAATAAAGAAATACGATAAAGAAAATATCATTGAAGAGAGATTCAAAGAACTTGAAAGAGAAAGTTGTAATTCAAAAAGTTCTGATCCATCATTTATTCGTACTCTAGAAACTAACACTGATCTGTTAGCTTGCAAAGCTGAATACTACCATCAGTGTGGTGAATATCAGAAATGCTTTGAACTTACCTCTGTTTTGCTTGAAAAAGATCCCTTCCATTTAAAAAGTACACTGGTACATTTAGCTGCAGCAATGGAGCTTGGACATTCAAATGAACTTTATCTAATGGCATGCAACCTGGTCAAGGACTATCCTCAAAAGGCGTTGTCATGGTTTGCTGTCGGTTGCTATTACTACTGTATCAAAAAATATGATCAATCACGTCGTTTTTTCAGCAAAGCTACAACTCTGGACGGAACATTTGCACCTGCTTGGATAGGGTATGGTAACGCTTATGCTGCTCAAGAAGAGGGTGACCAAGCCATGTCTGCTTATCGCACTGGCGCTCGATTGTTTCCAGGGTGTCATTTACCAACATTATACATTGGGATGGAATATATGCGAACCCACAGCTTTAAGCTTGCTGAGCAGTTTTTTGTGCAGGCGAAGACAATTTGTCCATCAGATCCTCTTGTTTACAATGAGCTTGGAGTTGTTGCTTATGACATGAAGGAGTATAATAAGGCTGCATGGTGGTTTGAGAAGACTTTGGCCTGCGTTCCATCTCCTTTGAGTGAAATGTGGGAGCCTACCGTAGTTAATCTCGCCCATTCATATCGAAAATTAAAGGTGTACCGTGAAGCAATTGCATACTATGAGAAAGCACTTGCGTTGTCAACAAGAAGTCTTAGCACTTATGCTGGTCTTGCATATACTTATCATTTGCAGGATCATTTTACTGCAGCCATTACATACTACCATAAGGCATTGTGGCTGAAACCAGATGATCAGTTCTGCACAGAAATGTTAAGTATAGCTCTTATGGATGAATGCCAAAATGGGATGGATCCTAAGGCAGACCTTCGGAGGAGTGAGGAGTTTGTATCTAGCAAGAGAAAGGTAGAGAGGTCCCTGGATAGAATAGATAGAAATTGTTGA 1884 44.11 MFNGHSKPNQASRPFSTLFNFPSTSLRLCQNPSASGRTRPLQFSCSTNLHSSAPSKSLRMREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRDPRFRYLAAKCLEELKEWDQCLAMLGDAKVNEHGYVLDNKDHSGMYLDKDCEDREINIAAATCFLRGKAYEALENRTQARLWYKAAIKADPLCYEALECLIESHMLTCDEESSLLSSLQFGPEDGWLSSFYACLIKKYDKENIIEERFKELERESCNSKSSDPSFIRTLETNTDLLACKAEYYHQCGEYQKCFELTSVLLEKDPFHLKSTLVHLAAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRFFSKATTLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTGARLFPGCHLPTLYIGMEYMRTHSFKLAEQFFVQAKTICPSDPLVYNELGVVAYDMKEYNKAAWWFEKTLACVPSPLSEMWEPTVVNLAHSYRKLKVYREAIAYYEKALALSTRSLSTYAGLAYTYHLQDHFTAAITYYHKALWLKPDDQFCTEMLSIALMDECQNGMDPKADLRRSEEFVSSKRKVERSLDRIDRNC 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3421256 3429364 + CmaCh04G006720.1 Cma04g00672 291753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00672 627 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 65 595 - -
Cma04g00672 627 Pfam Anaphase-promoting complex, cyclosome, subunit 3 78 156 - -
Cma04g00672 627 SUPERFAMILY TPR-like 366 582 IPR011990 GO:0005515
Cma04g00672 627 Pfam Tetratricopeptide repeat 547 578 IPR019734 GO:0005515
Cma04g00672 627 Gene3D Tetratricopeptide repeat domain 64 591 IPR011990 GO:0005515
Cma04g00672 627 ProSiteProfiles TPR repeat profile. 472 505 IPR019734 GO:0005515
Cma04g00672 627 ProSiteProfiles TPR repeat profile. 404 437 IPR019734 GO:0005515
Cma04g00672 627 SMART tpr_5 404 437 IPR019734 GO:0005515
Cma04g00672 627 SMART tpr_5 189 222 IPR019734 GO:0005515
Cma04g00672 627 SMART tpr_5 545 578 IPR019734 GO:0005515
Cma04g00672 627 SMART tpr_5 438 471 IPR019734 GO:0005515
Cma04g00672 627 SMART tpr_5 370 403 IPR019734 GO:0005515
Cma04g00672 627 SMART tpr_5 511 544 IPR019734 GO:0005515
Cma04g00672 627 SMART tpr_5 302 335 IPR019734 GO:0005515
Cma04g00672 627 SMART tpr_5 472 505 IPR019734 GO:0005515
Cma04g00672 627 PANTHER CELL DIVISION CYCLE 16,23,27 65 595 - -
Cma04g00672 627 Pfam Tetratricopeptide repeat 190 220 IPR019734 GO:0005515
Cma04g00672 627 Pfam Tetratricopeptide repeat 515 541 IPR019734 GO:0005515
Cma04g00672 627 SUPERFAMILY TPR-like 97 234 IPR011990 GO:0005515
Cma04g00672 627 ProSiteProfiles TPR repeat profile. 545 578 IPR019734 GO:0005515
Cma04g00672 627 ProSiteProfiles TPR repeat profile. 511 544 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00672 K03353 APC6, CDC16; anaphase-promoting complex subunit 6 - csv:101217217 1092.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00672 Cma16g00435 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00672 Cma-Chr4:3421256 Cma16g00434 Cma-Chr16:2165009 3.56E-121 dispersed
Cma16g00435 Cma-Chr16:2170707 Cma04g00672 Cma-Chr4:3421256 7.07E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g99 . . . . . . . Bma13g00927 Cmo16g00470 Cmo04g00718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00730 . . . . . . . . . Cma04g00672 Cma16g00435 . . Cpe14g00368 Cpe01g00606 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006118 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00672 Cma_Chr04 FPKM 2.666296 4.890862 5.64973 4.928612 9.305624 10.266284 8.174098 10.891648 8.655397 10.861127