Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00675 | ATGGCTAATCGGGTTGGGGGGTCGTTTTCACCCTCAAATGTTTCATCTCAAGGTTCGGGAAGAGATGGCCTTTACGTTGAGTTATGGAAGGCCTCTGCTGGGCCTCTTGTCGAAGTTCCTCGTGTTCATGAACATGTTTTCTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTCCCTTCCTTTAATCTTCCCTCCAAAATTCTCTGTCATGTAGTTGATGTCCGGCTGCTGGCAGAGCAGGAGACGGATGAGGTTTATGCACAGATATCTTTAATTCCAGAAGGAAATCAAGAGGAACCTACAACTCCTGGTCCTTCGCCCGGGGAATGTCGAAAATCGAAAGTTCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGATTCTCTGTGCTCCGTAAACACGCGACCGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCAACTCAAGAACTCATAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATATTCAGGGGTCAACCACGAAGGCATTTGCTAACGACCGGATGGAGCACCTTTGTTACGTCTAAGAGATTAGTTGCTGGAGACTCGTTTGTATTCTTGAGGGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCGTCTTTCTCGTCAACAAACCACCATGCCTTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCTGCTGCAACTCTAACTCGCTTCGTTGTCTATTATAAGCCGAGGGCAAGCCAGTTTCTGGTCAGCTTAAGTAAGTATAAAGAAGCCATGAACACTAAGTTCTTAGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGAGAGGACTCTCCTGAGAGAAGGTTTTCGGGTACCATAATTGGCGTTGACGACATATCTCCTTACTGGCCCAATTCGCAATGGCGATCACTGAGAGTTCAATGGGATGAACTTGCATCTATTCAAAGACCCGAGAGGGTTTCGCTATGGGAGATCGAACCGTTTGTGGCTCCCGTGTCCCAGAGCATTCCTCAATCAATTTCGGTAAAGAACAAACGGCCTCGGCCTCCCCTTGACATTCCAGATTCTGATAATTCAACCGTGACAACTCTTCGACATCCAGTATCGACTCAATCACATGATGATAAAACACAGCTGAGTGTTCCTGCAGGATGGCATTACAAGCAAACAGATATTAGCAGCAATGGGAATTCGGTATCGAGGACTCATAACGATGGTTCTTGGTTAACCGTCCCGAATGGGAGTGTTTCGCAGCATCGATTAAAGGATTCGACAGAGGACCATAAAAGCAATTCTGTCTGGTCAGCAGTCTTCCCTGGAGTGCCAACAGCACACTCGACATGTCCAACTCCACGCACATCGAACCCAATGAGTGACCAAATAAATGAGTTTGGGGAAGAGGGGAGGAAAACCGAGGTGGCTCCTAGCTGTCGCTTGTTTGGGATCGAGCTCATTGATCATTCTAAGAGGCCCGTTCCACCCGAAACGACTGCTGATCAATCAAACAGCGCACCAAATGAAGTCACTGAAAGCCATATCAATACTTTGCTGTCATCTAACGCAGAGCAGCAGGGCTCAAACCTGCCAAAGGCTTCTTCTAAAGAACGAAAATTAGGACTTTTACAAGCACTTCCTAAAGAGATCCAGCACAAGCAGAATGCCTCGACCAACTGTCGAAGCCGAACCAAGGTTCAAATGCAGGGGATGGCTGTGGGACGAGCGGTGGACCTTACGACATTGGTAGGGTATGACCAACTCATTGACGAAATGGAAAAGATGTTTGATGTCAAGGGAGAACTTCGTCCTCGTGACAAGTGGGAGATTGTATTCACAGACGATGAAGGCGATACGATGCTCATGGGCGATTATCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCGAGTCAAGATGTAAAGACGAGTTCGGGCAGAAGACTCACAATGTCTGCGATCGAATTCGATGGAACTGCAATAACCTCGGAATCAGCTGATAGCTGA | 2100 | 47.19 | MANRVGGSFSPSNVSSQGSGRDGLYVELWKASAGPLVEVPRVHEHVFYFPQGHMEQLEASTNQELNQKLPSFNLPSKILCHVVDVRLLAEQETDEVYAQISLIPEGNQEEPTTPGPSPGECRKSKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLSRQQTTMPSSVISSHSMHLGVLATASHAAATLTRFVVYYKPRASQFLVSLSKYKEAMNTKFLVGMRFKMRFEGEDSPERRFSGTIIGVDDISPYWPNSQWRSLRVQWDELASIQRPERVSLWEIEPFVAPVSQSIPQSISVKNKRPRPPLDIPDSDNSTVTTLRHPVSTQSHDDKTQLSVPAGWHYKQTDISSNGNSVSRTHNDGSWLTVPNGSVSQHRLKDSTEDHKSNSVWSAVFPGVPTAHSTCPTPRTSNPMSDQINEFGEEGRKTEVAPSCRLFGIELIDHSKRPVPPETTADQSNSAPNEVTESHINTLLSSNAEQQGSNLPKASSKERKLGLLQALPKEIQHKQNASTNCRSRTKVQMQGMAVGRAVDLTTLVGYDQLIDEMEKMFDVKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKTSSGRRLTMSAIEFDGTAITSESADS | 699 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3436434 | 3440489 | - | CmaCh04G006750.1 | Cma04g00675 | 291756 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00675 | 699 | SUPERFAMILY | CAD & PB1 domains | 586 | 664 | - | - | |
Cma04g00675 | 699 | SMART | B3_2 | 129 | 231 | IPR003340 | GO:0003677 | |
Cma04g00675 | 699 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma04g00675 | 699 | CDD | B3_DNA | 127 | 229 | IPR003340 | GO:0003677 | |
Cma04g00675 | 699 | MobiDBLite | consensus disorder prediction | 384 | 406 | - | - | |
Cma04g00675 | 699 | PANTHER | AUXIN RESPONSE FACTOR 9 | 19 | 684 | - | - | |
Cma04g00675 | 699 | MobiDBLite | consensus disorder prediction | 418 | 457 | - | - | |
Cma04g00675 | 699 | ProSiteProfiles | PB1 domain profile. | 588 | 669 | IPR000270 | GO:0005515 | |
Cma04g00675 | 699 | MobiDBLite | consensus disorder prediction | 517 | 538 | - | - | |
Cma04g00675 | 699 | MobiDBLite | consensus disorder prediction | 523 | 538 | - | - | |
Cma04g00675 | 699 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 231 | IPR003340 | GO:0003677 | |
Cma04g00675 | 699 | Gene3D | - | 583 | 676 | - | - | |
Cma04g00675 | 699 | MobiDBLite | consensus disorder prediction | 368 | 406 | - | - | |
Cma04g00675 | 699 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 19 | 684 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cma04g00675 | 699 | Gene3D | - | 290 | 363 | - | - | |
Cma04g00675 | 699 | Pfam | AUX/IAA family | 576 | 624 | IPR033389 | - | |
Cma04g00675 | 699 | Pfam | AUX/IAA family | 635 | 672 | IPR033389 | - | |
Cma04g00675 | 699 | Gene3D | - | 126 | 230 | IPR015300 | - | |
Cma04g00675 | 699 | Pfam | B3 DNA binding domain | 129 | 229 | IPR003340 | GO:0003677 | |
Cma04g00675 | 699 | SUPERFAMILY | DNA-binding pseudobarrel domain | 120 | 258 | IPR015300 | - | |
Cma04g00675 | 699 | Pfam | Auxin response factor | 255 | 333 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cma04g00675 | 699 | MobiDBLite | consensus disorder prediction | 418 | 448 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00922 | Cma-Chr2:5485375 | Cma04g00675 | Cma-Chr4:3436434 | 0 | dispersed | |
Cma04g00675 | Cma-Chr4:3436434 | Cma15g01291 | Cma-Chr15:8184046 | 0 | dispersed | |
Cma06g00003 | Cma-Chr6:6741 | Cma04g00675 | Cma-Chr4:3436434 | 0 | transposed | |
Cma16g00533 | Cma-Chr16:2722122 | Cma04g00675 | Cma-Chr4:3436434 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34790 | PF02362 | B3 | 8.70E-22 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00675 | K14486 | - | csv:101213942 | 1096.65 |