Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00675 ATGGCTAATCGGGTTGGGGGGTCGTTTTCACCCTCAAATGTTTCATCTCAAGGTTCGGGAAGAGATGGCCTTTACGTTGAGTTATGGAAGGCCTCTGCTGGGCCTCTTGTCGAAGTTCCTCGTGTTCATGAACATGTTTTCTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTCCCTTCCTTTAATCTTCCCTCCAAAATTCTCTGTCATGTAGTTGATGTCCGGCTGCTGGCAGAGCAGGAGACGGATGAGGTTTATGCACAGATATCTTTAATTCCAGAAGGAAATCAAGAGGAACCTACAACTCCTGGTCCTTCGCCCGGGGAATGTCGAAAATCGAAAGTTCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGATTCTCTGTGCTCCGTAAACACGCGACCGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCAACTCAAGAACTCATAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATATTCAGGGGTCAACCACGAAGGCATTTGCTAACGACCGGATGGAGCACCTTTGTTACGTCTAAGAGATTAGTTGCTGGAGACTCGTTTGTATTCTTGAGGGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCGTCTTTCTCGTCAACAAACCACCATGCCTTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCTGCTGCAACTCTAACTCGCTTCGTTGTCTATTATAAGCCGAGGGCAAGCCAGTTTCTGGTCAGCTTAAGTAAGTATAAAGAAGCCATGAACACTAAGTTCTTAGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGAGAGGACTCTCCTGAGAGAAGGTTTTCGGGTACCATAATTGGCGTTGACGACATATCTCCTTACTGGCCCAATTCGCAATGGCGATCACTGAGAGTTCAATGGGATGAACTTGCATCTATTCAAAGACCCGAGAGGGTTTCGCTATGGGAGATCGAACCGTTTGTGGCTCCCGTGTCCCAGAGCATTCCTCAATCAATTTCGGTAAAGAACAAACGGCCTCGGCCTCCCCTTGACATTCCAGATTCTGATAATTCAACCGTGACAACTCTTCGACATCCAGTATCGACTCAATCACATGATGATAAAACACAGCTGAGTGTTCCTGCAGGATGGCATTACAAGCAAACAGATATTAGCAGCAATGGGAATTCGGTATCGAGGACTCATAACGATGGTTCTTGGTTAACCGTCCCGAATGGGAGTGTTTCGCAGCATCGATTAAAGGATTCGACAGAGGACCATAAAAGCAATTCTGTCTGGTCAGCAGTCTTCCCTGGAGTGCCAACAGCACACTCGACATGTCCAACTCCACGCACATCGAACCCAATGAGTGACCAAATAAATGAGTTTGGGGAAGAGGGGAGGAAAACCGAGGTGGCTCCTAGCTGTCGCTTGTTTGGGATCGAGCTCATTGATCATTCTAAGAGGCCCGTTCCACCCGAAACGACTGCTGATCAATCAAACAGCGCACCAAATGAAGTCACTGAAAGCCATATCAATACTTTGCTGTCATCTAACGCAGAGCAGCAGGGCTCAAACCTGCCAAAGGCTTCTTCTAAAGAACGAAAATTAGGACTTTTACAAGCACTTCCTAAAGAGATCCAGCACAAGCAGAATGCCTCGACCAACTGTCGAAGCCGAACCAAGGTTCAAATGCAGGGGATGGCTGTGGGACGAGCGGTGGACCTTACGACATTGGTAGGGTATGACCAACTCATTGACGAAATGGAAAAGATGTTTGATGTCAAGGGAGAACTTCGTCCTCGTGACAAGTGGGAGATTGTATTCACAGACGATGAAGGCGATACGATGCTCATGGGCGATTATCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCGAGTCAAGATGTAAAGACGAGTTCGGGCAGAAGACTCACAATGTCTGCGATCGAATTCGATGGAACTGCAATAACCTCGGAATCAGCTGATAGCTGA 2100 47.19 MANRVGGSFSPSNVSSQGSGRDGLYVELWKASAGPLVEVPRVHEHVFYFPQGHMEQLEASTNQELNQKLPSFNLPSKILCHVVDVRLLAEQETDEVYAQISLIPEGNQEEPTTPGPSPGECRKSKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLSRQQTTMPSSVISSHSMHLGVLATASHAAATLTRFVVYYKPRASQFLVSLSKYKEAMNTKFLVGMRFKMRFEGEDSPERRFSGTIIGVDDISPYWPNSQWRSLRVQWDELASIQRPERVSLWEIEPFVAPVSQSIPQSISVKNKRPRPPLDIPDSDNSTVTTLRHPVSTQSHDDKTQLSVPAGWHYKQTDISSNGNSVSRTHNDGSWLTVPNGSVSQHRLKDSTEDHKSNSVWSAVFPGVPTAHSTCPTPRTSNPMSDQINEFGEEGRKTEVAPSCRLFGIELIDHSKRPVPPETTADQSNSAPNEVTESHINTLLSSNAEQQGSNLPKASSKERKLGLLQALPKEIQHKQNASTNCRSRTKVQMQGMAVGRAVDLTTLVGYDQLIDEMEKMFDVKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKTSSGRRLTMSAIEFDGTAITSESADS 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3436434 3440489 - CmaCh04G006750.1 Cma04g00675 291756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00675 699 SUPERFAMILY CAD & PB1 domains 586 664 - -
Cma04g00675 699 SMART B3_2 129 231 IPR003340 GO:0003677
Cma04g00675 699 MobiDBLite consensus disorder prediction 1 20 - -
Cma04g00675 699 CDD B3_DNA 127 229 IPR003340 GO:0003677
Cma04g00675 699 MobiDBLite consensus disorder prediction 384 406 - -
Cma04g00675 699 PANTHER AUXIN RESPONSE FACTOR 9 19 684 - -
Cma04g00675 699 MobiDBLite consensus disorder prediction 418 457 - -
Cma04g00675 699 ProSiteProfiles PB1 domain profile. 588 669 IPR000270 GO:0005515
Cma04g00675 699 MobiDBLite consensus disorder prediction 517 538 - -
Cma04g00675 699 MobiDBLite consensus disorder prediction 523 538 - -
Cma04g00675 699 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Cma04g00675 699 Gene3D - 583 676 - -
Cma04g00675 699 MobiDBLite consensus disorder prediction 368 406 - -
Cma04g00675 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma04g00675 699 Gene3D - 290 363 - -
Cma04g00675 699 Pfam AUX/IAA family 576 624 IPR033389 -
Cma04g00675 699 Pfam AUX/IAA family 635 672 IPR033389 -
Cma04g00675 699 Gene3D - 126 230 IPR015300 -
Cma04g00675 699 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677
Cma04g00675 699 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Cma04g00675 699 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma04g00675 699 MobiDBLite consensus disorder prediction 418 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00922 Cma-Chr2:5485375 Cma04g00675 Cma-Chr4:3436434 0 dispersed
Cma04g00675 Cma-Chr4:3436434 Cma15g01291 Cma-Chr15:8184046 0 dispersed
Cma06g00003 Cma-Chr6:6741 Cma04g00675 Cma-Chr4:3436434 0 transposed
Cma16g00533 Cma-Chr16:2722122 Cma04g00675 Cma-Chr4:3436434 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34790 PF02362 B3 8.70E-22 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00675 K14486 - csv:101213942 1096.65