Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00723 ATGGTAATGGATGGTGACATTCATAATTCACATGATATGGCAAGTTCTAGTACTGTCAATTACCAAAGCTCTGATGCTGCTGCTGCTGCTGAAATTGATTGGGTTGGGATTTTTGGTGGTTACTCTGATGTGAGTTTGGAAATGGAGAAGGGCAGTGGAGTTAGTGAGGGTGCAACAATGGCCATGGGGGATTATAACTACCAGAATGACACTCATGTTCATGTTCATGGAGGGAAGAACAAAGGGAAAATGGCGATGGCAAAAAGAGGTGCAATTCCTAGGGTTGCTTTTCAGACAAGGAGCGCTGAGGATGTTCTTGACGATGGGTATCGATGGAGGAAATATGGTCAGAAGGCTGTGAAACATAGCACTCATCCTAGGAGCTATTACCGATGTACGCATCATACATGCAACGTTAAGAAACAAATTCAACGGCATTCCAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCATAACCATCCATCTGAAAAATTAATGGAGACTCTAACCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAG 558 43.19 MVMDGDIHNSHDMASSSTVNYQSSDAAAAAEIDWVGIFGGYSDVSLEMEKGSGVSEGATMAMGDYNYQNDTHVHVHGGKNKGKMAMAKRGAIPRVAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLTPLLKQLQFLSGI 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3680441 3681595 - CmaCh04G007230.1 Cma04g00723 291804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00723 185 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 181 IPR044810 GO:0003700
Cma04g00723 185 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 21 181 - -
Cma04g00723 185 SMART WRKY_cls 106 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g00723 185 Pfam WRKY DNA -binding domain 107 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g00723 185 Gene3D WRKY domain 90 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g00723 185 SUPERFAMILY WRKY DNA-binding domain 99 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g00723 185 ProSiteProfiles WRKY domain profile. 101 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00723 Cma-Chr4:3680441 Cma06g01672 Cma-Chr6:10315006 6.05E-38 dispersed
Cma04g00723 Cma-Chr4:3680441 Cma14g00727 Cma-Chr14:3641445 1.80E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34795 PF03106 WRKY 9.90E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00723 - - cpep:111803929 350.517