Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00723 | ATGGTAATGGATGGTGACATTCATAATTCACATGATATGGCAAGTTCTAGTACTGTCAATTACCAAAGCTCTGATGCTGCTGCTGCTGCTGAAATTGATTGGGTTGGGATTTTTGGTGGTTACTCTGATGTGAGTTTGGAAATGGAGAAGGGCAGTGGAGTTAGTGAGGGTGCAACAATGGCCATGGGGGATTATAACTACCAGAATGACACTCATGTTCATGTTCATGGAGGGAAGAACAAAGGGAAAATGGCGATGGCAAAAAGAGGTGCAATTCCTAGGGTTGCTTTTCAGACAAGGAGCGCTGAGGATGTTCTTGACGATGGGTATCGATGGAGGAAATATGGTCAGAAGGCTGTGAAACATAGCACTCATCCTAGGAGCTATTACCGATGTACGCATCATACATGCAACGTTAAGAAACAAATTCAACGGCATTCCAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCATAACCATCCATCTGAAAAATTAATGGAGACTCTAACCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAG | 558 | 43.19 | MVMDGDIHNSHDMASSSTVNYQSSDAAAAAEIDWVGIFGGYSDVSLEMEKGSGVSEGATMAMGDYNYQNDTHVHVHGGKNKGKMAMAKRGAIPRVAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLTPLLKQLQFLSGI | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3680441 | 3681595 | - | CmaCh04G007230.1 | Cma04g00723 | 291804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00723 | 185 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 21 | 181 | IPR044810 | GO:0003700 | |
Cma04g00723 | 185 | PANTHER | WRKY TRANSCRIPTION FACTOR 43-RELATED | 21 | 181 | - | - | |
Cma04g00723 | 185 | SMART | WRKY_cls | 106 | 165 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g00723 | 185 | Pfam | WRKY DNA -binding domain | 107 | 164 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g00723 | 185 | Gene3D | WRKY domain | 90 | 165 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g00723 | 185 | SUPERFAMILY | WRKY DNA-binding domain | 99 | 165 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g00723 | 185 | ProSiteProfiles | WRKY domain profile. | 101 | 166 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00723 | Cma-Chr4:3680441 | Cma06g01672 | Cma-Chr6:10315006 | 6.05E-38 | dispersed | |
Cma04g00723 | Cma-Chr4:3680441 | Cma14g00727 | Cma-Chr14:3641445 | 1.80E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34795 | PF03106 | WRKY | 9.90E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00723 | - | - | cpep:111803929 | 350.517 |