Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00739 ATGGATTTGGGTTCGTGTTCTAGATTTCCGCTTCATTCAAGCACAGATTTTGAAAAGGAGGAGGAGCAGCAGCAGCAGCAGCAACGAGAAATGGAATCCAGCTCCCTTTTTGTAGAGAAAGAGCACATGTTCGACAAAGTTGTGACTCCAAGCGATGTGGGAAAATTAAACAGGTTGGTCATCCCAAAGCAACACGCTGAAAAGTACTTCCCGCTTGATTCTTCATCCAACGACAAGGGTCTTCTCTTGAACTTCGAAGACCGCTGTGGAAAATCGTGGCGGTTCCGTTACTCTTACTGGACCAGCAGCCAGAGCTACGTCATGACTAAAGGCTGGAGCCGCTTTGTTAAAGAGAAGCGCCTCGATGCTGGTGATATCGTCTCCTTTCAACGAGGCCTTGGTCATCTTGGTAAAGGTCGGTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCCCCGTTTGACACACCTATTACTTTTCACCACAACCACCACCTCCACGGCGGTGGAGCCGCCGGGGTTGCCCAAATTCCTCACCATTTTCACCTTCACCAGTGGAGTCCAGTTGCCACACCCTTATCTTTACCCAGGGACCACCTCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATCTTACCCTATTTCATAATGATAATTTTAATCTCTATAATCATCATTATCTTAACCCTCCTCCCATCCGAGACGGCGGTGGTTCGCCATCGGTTTTGTACCATTTAAGATCTGCACCGCCACCGCCGCCGGAGGCGGTGGGCGGTGGTGCCGGTGGAATTGGGAAAGGTGCTGCTCCTTCTAAGACATTGAGACTTTTTGGAGTCAACATGGAATGTGCAGTGTCTGAAGATCAATCCGATGATGAATGTGACATAACAACCTCGACTACGACAATGTCACCTCAATTCCGCATTTACGATGGAATGCCAATGTCGATACCGATATCGATGCCTAACAGTAGCGATGGCTGTCTCTACTTGGTTGGACAAATGGCAAAGCCCATGCAAGTTTTGGCAGAGAAAAGTTTCAAAGAGATGGCTTTTAACAGTTTTGGATATGGCAGTGGAAGCAAATGCTTTCTTTTTCTGGGAAAAGTTTAG 1116 47.58 MDLGSCSRFPLHSSTDFEKEEEQQQQQQREMESSSLFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRCGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGLGHLGKGRFFIDWRRRPPHAPFDTPITFHHNHHLHGGGAAGVAQIPHHFHLHQWSPVATPLSLPRDHLLHLPQNNSNHNNLTLFHNDNFNLYNHHYLNPPPIRDGGGSPSVLYHLRSAPPPPPEAVGGGAGGIGKGAAPSKTLRLFGVNMECAVSEDQSDDECDITTSTTTMSPQFRIYDGMPMSIPISMPNSSDGCLYLVGQMAKPMQVLAEKSFKEMAFNSFGYGSGSKCFLFLGKV 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3757346 3760304 - CmaCh04G007390.1 Cma04g00739 291820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00739 371 Pfam B3 DNA binding domain 44 148 IPR003340 GO:0003677
Cma04g00739 371 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 19 304 - -
Cma04g00739 371 SUPERFAMILY DNA-binding pseudobarrel domain 41 147 IPR015300 -
Cma04g00739 371 SMART B3_2 44 149 IPR003340 GO:0003677
Cma04g00739 371 MobiDBLite consensus disorder prediction 13 27 - -
Cma04g00739 371 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 304 IPR044800 GO:0003700
Cma04g00739 371 Gene3D - 37 162 IPR015300 -
Cma04g00739 371 ProSiteProfiles B3 DNA-binding domain profile. 44 149 IPR003340 GO:0003677
Cma04g00739 371 MobiDBLite consensus disorder prediction 1 32 - -
Cma04g00739 371 CDD B3_DNA 42 131 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00959 Cma-Chr2:5702087 Cma04g00739 Cma-Chr4:3757346 3.86E-69 dispersed
Cma04g00739 Cma-Chr4:3757346 Cma15g01340 Cma-Chr15:8405825 6.85E-69 dispersed
Cma08g00001 Cma-Chr8:7522 Cma04g00739 Cma-Chr4:3757346 3.49E-67 transposed
Cma16g00597 Cma-Chr16:3085688 Cma04g00739 Cma-Chr4:3757346 8.69E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34797 PF02362 B3 2.40E-28 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00739 - - cmax:111480823 629.402