Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00753 | ATGGCGATGGTTGAGGTTTCTGTTATGACGTCGAGCACGGGATCTGGGATTTTGATGTTGGTCGGTAGCAGATTTGATTTTGACAGAAAGGGTGCTTGCTTATGCTGGAAAAAGATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCAAAACGAGGAGAAGAAGGGAGCAGGCACTGGCGAAACCAAACAATGTCGCATATTGCACCTGATCAAGTACCTTCTTCATCGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCAGAATTACTTTTAGACATCATCCGGAGAGTGGAACAGAGTGAAACTTCATGGCCTGCTCGATCTGTAGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCCGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCGCGGGAGTCTCCATTTCAGTTCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGCATGGTTCCCTCGGAGGTCAAAAAGGACAAATTGTTGTTAGCAGCCAAAAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTGGCAGCTGATGATTTTTCTCGAGCGAGTAGTACGTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACAAAGTTCTCAATTTACGATAGCCAACCTCCTTGTGACCCTGCAGCTCAGCAAAATAGTCGATCAAGCCGGAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATTTAATTACTGTGTAGGTACAATTTCTTATGAACTTAACGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACTATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTATCGATGACCACCTTTCTACCATGTCGGATTCTATGAGAAAGGGTTCAGCTAAGGACTTTAGCCCAAAGATCCTATCAGAACCAGCAGTTCAAGATTTGGATGAATCCTTGGTGCTTAAAAACAAGGCGCCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCTTAAATTTCAGGGGACGTGTGACCGTGGCATCTGTTAAGAACTTCCAACTCGTTGCAGCCGTCGATCAATCGCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGATAACTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCTTTTGCTATCTGCTTGAGCAGCTTCGACACAAAGCCAGCCTGCGAATGA | 1356 | 45.65 | MAMVEVSVMTSSTGSGILMLVGSRFDFDRKGACLCWKKMSLKSFVRELREMKDGIGSISKRGEEGSRHWRNQTMSHIAPDQVPSSSELIQQGRWANLPPELLLDIIRRVEQSETSWPARSVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQFFIRRDRATSTYLLYFGMVPSEVKKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAQQNSRSSRRFRSKQVSPRVPAFNYCVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSTMSDSMRKGSAKDFSPKILSEPAVQDLDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDNFTMDYHYPLSAFQAFAICLSSFDTKPACE | 451 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3838952 | 3842150 | + | CmaCh04G007530.1 | Cma04g00753 | 291834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00753 | 451 | Gene3D | - | 88 | 142 | - | - | |
Cma04g00753 | 451 | PRINTS | Tubby superfamily signature | 209 | 225 | IPR000007 | - | |
Cma04g00753 | 451 | PRINTS | Tubby superfamily signature | 379 | 395 | IPR000007 | - | |
Cma04g00753 | 451 | PRINTS | Tubby superfamily signature | 225 | 249 | IPR000007 | - | |
Cma04g00753 | 451 | PRINTS | Tubby superfamily signature | 408 | 427 | IPR000007 | - | |
Cma04g00753 | 451 | PRINTS | Tubby superfamily signature | 274 | 301 | IPR000007 | - | |
Cma04g00753 | 451 | PRINTS | Tubby superfamily signature | 429 | 451 | IPR000007 | - | |
Cma04g00753 | 451 | PRINTS | Tubby superfamily signature | 361 | 378 | IPR000007 | - | |
Cma04g00753 | 451 | SUPERFAMILY | F-box domain | 87 | 138 | IPR036047 | GO:0005515 | |
Cma04g00753 | 451 | SUPERFAMILY | Tubby C-terminal domain-like | 143 | 451 | IPR025659 | - | |
Cma04g00753 | 451 | MobiDBLite | consensus disorder prediction | 245 | 265 | - | - | |
Cma04g00753 | 451 | Pfam | Tub family | 155 | 446 | IPR000007 | - | |
Cma04g00753 | 451 | ProSitePatterns | Tub family signature 1. | 379 | 392 | IPR018066 | - | |
Cma04g00753 | 451 | ProSitePatterns | Tub family signature 2. | 436 | 451 | IPR018066 | - | |
Cma04g00753 | 451 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 39 | 451 | - | - | |
Cma04g00753 | 451 | MobiDBLite | consensus disorder prediction | 246 | 261 | - | - | |
Cma04g00753 | 451 | PANTHER | TUBBY-RELATED | 39 | 451 | - | - | |
Cma04g00753 | 451 | Pfam | F-box domain | 94 | 140 | IPR001810 | GO:0005515 | |
Cma04g00753 | 451 | Gene3D | Tubby Protein; Chain A | 153 | 451 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00753 | Cma-Chr4:3838952 | Cma09g00148 | Cma-Chr9:634904 | 0 | dispersed | |
Cma16g00616 | Cma-Chr16:3186287 | Cma04g00753 | Cma-Chr4:3838952 | 0 | wgd | |
Cma04g00753 | Cma-Chr4:3838952 | Cma07g00481 | Cma-Chr7:2099589 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34798 | PF01167 | Tub | 3.70E-103 | CL0395 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00753 | K19600 | - | csv:101205595 | 748.429 |