Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00753 ATGGCGATGGTTGAGGTTTCTGTTATGACGTCGAGCACGGGATCTGGGATTTTGATGTTGGTCGGTAGCAGATTTGATTTTGACAGAAAGGGTGCTTGCTTATGCTGGAAAAAGATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCAAAACGAGGAGAAGAAGGGAGCAGGCACTGGCGAAACCAAACAATGTCGCATATTGCACCTGATCAAGTACCTTCTTCATCGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCAGAATTACTTTTAGACATCATCCGGAGAGTGGAACAGAGTGAAACTTCATGGCCTGCTCGATCTGTAGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCCGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCGCGGGAGTCTCCATTTCAGTTCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGCATGGTTCCCTCGGAGGTCAAAAAGGACAAATTGTTGTTAGCAGCCAAAAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTGGCAGCTGATGATTTTTCTCGAGCGAGTAGTACGTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACAAAGTTCTCAATTTACGATAGCCAACCTCCTTGTGACCCTGCAGCTCAGCAAAATAGTCGATCAAGCCGGAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATTTAATTACTGTGTAGGTACAATTTCTTATGAACTTAACGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACTATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTATCGATGACCACCTTTCTACCATGTCGGATTCTATGAGAAAGGGTTCAGCTAAGGACTTTAGCCCAAAGATCCTATCAGAACCAGCAGTTCAAGATTTGGATGAATCCTTGGTGCTTAAAAACAAGGCGCCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCTTAAATTTCAGGGGACGTGTGACCGTGGCATCTGTTAAGAACTTCCAACTCGTTGCAGCCGTCGATCAATCGCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGATAACTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCTTTTGCTATCTGCTTGAGCAGCTTCGACACAAAGCCAGCCTGCGAATGA 1356 45.65 MAMVEVSVMTSSTGSGILMLVGSRFDFDRKGACLCWKKMSLKSFVRELREMKDGIGSISKRGEEGSRHWRNQTMSHIAPDQVPSSSELIQQGRWANLPPELLLDIIRRVEQSETSWPARSVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQFFIRRDRATSTYLLYFGMVPSEVKKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAQQNSRSSRRFRSKQVSPRVPAFNYCVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSTMSDSMRKGSAKDFSPKILSEPAVQDLDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDNFTMDYHYPLSAFQAFAICLSSFDTKPACE 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3838952 3842150 + CmaCh04G007530.1 Cma04g00753 291834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00753 451 Gene3D - 88 142 - -
Cma04g00753 451 PRINTS Tubby superfamily signature 209 225 IPR000007 -
Cma04g00753 451 PRINTS Tubby superfamily signature 379 395 IPR000007 -
Cma04g00753 451 PRINTS Tubby superfamily signature 225 249 IPR000007 -
Cma04g00753 451 PRINTS Tubby superfamily signature 408 427 IPR000007 -
Cma04g00753 451 PRINTS Tubby superfamily signature 274 301 IPR000007 -
Cma04g00753 451 PRINTS Tubby superfamily signature 429 451 IPR000007 -
Cma04g00753 451 PRINTS Tubby superfamily signature 361 378 IPR000007 -
Cma04g00753 451 SUPERFAMILY F-box domain 87 138 IPR036047 GO:0005515
Cma04g00753 451 SUPERFAMILY Tubby C-terminal domain-like 143 451 IPR025659 -
Cma04g00753 451 MobiDBLite consensus disorder prediction 245 265 - -
Cma04g00753 451 Pfam Tub family 155 446 IPR000007 -
Cma04g00753 451 ProSitePatterns Tub family signature 1. 379 392 IPR018066 -
Cma04g00753 451 ProSitePatterns Tub family signature 2. 436 451 IPR018066 -
Cma04g00753 451 PANTHER TUBBY-LIKE F-BOX PROTEIN 39 451 - -
Cma04g00753 451 MobiDBLite consensus disorder prediction 246 261 - -
Cma04g00753 451 PANTHER TUBBY-RELATED 39 451 - -
Cma04g00753 451 Pfam F-box domain 94 140 IPR001810 GO:0005515
Cma04g00753 451 Gene3D Tubby Protein; Chain A 153 451 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00753 Cma-Chr4:3838952 Cma09g00148 Cma-Chr9:634904 0 dispersed
Cma16g00616 Cma-Chr16:3186287 Cma04g00753 Cma-Chr4:3838952 0 wgd
Cma04g00753 Cma-Chr4:3838952 Cma07g00481 Cma-Chr7:2099589 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34798 PF01167 Tub 3.70E-103 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00753 K19600 - csv:101205595 748.429