Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00758 ATGGCCACACCCACCCAAAATTTAAGTCAGGTGGAAAACATTATTATTCAATATGGCAAACTCTGTTTCAAATCGATACTAAGTCTTTCCCAATCAAGCCTATTGGACGAGAATCTTAACACCAACGAGCAGGTGGCTATCAAGAAGATTAAAAATGTGTTTGAGAATCGCTTCAAGGCATTGAGAACGCTTAGGGAGATGAAGCTTTTGAGGCACATAAGACATGAGAATGTGATTGCTTTGAAGGATGTAATGATGCCCGCGCATAGAAATAGCTTTAAGGATGTGTATTTGGTTTACGAGCTCATGAACACGGATCTTGATCAGATTATCAGATCGTCTCAGCCCCTTTCAAATAATCATTGCAAGTGTGTGATGTATCAGTTTTTCGTTATAACGTGCGCTTGTAAGGAAAAGAGAGGGCGTTATCTTCATTCAACCAACATTCTTCATCGGGACTTAAAGCCCCGGAACCTCCTCATCAATGTTGATTGTGATTTGAAGATTTGTGATTTCGGGTTAGCACGGACGAGCAAAGGCCAGGACCAAGTCATGACCGAGTATGTTGTTACTCGCTGGTATCGTGCACTAGAGCTTCTCCTATCCTGTGACAGCTATGGGACTTCCATTGATGTGTGGTCTGTGGGGTGCATTTTTGCTGAGATTTTGGGTCGGACACCTATCTTCCACGGGATGAATTGCCTCAACCAACTAGGGTTAATCATCGAAGTTCTCGGTAGTCCAAAGGAAGCAGATATCGAGTTCATTGATAACCTAAAGTCCATAAAATTTATCAAAGCTATGCCTTTCTCAAAAGTGGTACAATTTTCAAATCAATATCCACAAGCTAAACCTTTAGCTTTAGATTTGCTGCAGAAGATGCTTGTGTTTGACCCGAGGAAGAGAATTACCGTTAATGAAGCAGTTCAACATCCATACATGTCCGATCTATACGAAACAGAATTCAATTCTACAAATGAGGTTCACTTCAGTCTCGACATCGACGAATCACTTAATGAGCATGAGATCAAAGAAATGATATTGACTGAGATGCTCTATTATCATCTTGAAGCTACTCTAACGTAG 1086 40.88 MATPTQNLSQVENIIIQYGKLCFKSILSLSQSSLLDENLNTNEQVAIKKIKNVFENRFKALRTLREMKLLRHIRHENVIALKDVMMPAHRNSFKDVYLVYELMNTDLDQIIRSSQPLSNNHCKCVMYQFFVITCACKEKRGRYLHSTNILHRDLKPRNLLINVDCDLKICDFGLARTSKGQDQVMTEYVVTRWYRALELLLSCDSYGTSIDVWSVGCIFAEILGRTPIFHGMNCLNQLGLIIEVLGSPKEADIEFIDNLKSIKFIKAMPFSKVVQFSNQYPQAKPLALDLLQKMLVFDPRKRITVNEAVQHPYMSDLYETEFNSTNEVHFSLDIDESLNEHEIKEMILTEMLYYHLEATLT 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3866271 3867551 - CmaCh04G007580.1 Cma04g00758 291839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00758 361 ProSiteProfiles Protein kinase domain profile. 12 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00758 361 Pfam Protein kinase domain 39 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00758 361 SMART serkin_6 32 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00758 361 SUPERFAMILY Protein kinase-like (PK-like) 38 318 IPR011009 -
Cma04g00758 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Cma04g00758 361 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 358 - -
Cma04g00758 361 Gene3D Phosphorylase Kinase; domain 1 38 348 - -
Cma04g00758 361 Gene3D Transferase(Phosphotransferase) domain 1 103 340 - -
Cma04g00758 361 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 358 - -
Cma04g00758 361 ProSitePatterns MAP kinase signature. 54 165 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00758 Cma-Chr4:3866271 Cma16g00631 Cma-Chr16:3258541 2.80E-169 dispersed
Cma04g00758 Cma-Chr4:3866271 Cma05g00263 Cma-Chr5:1112475 3.37E-154 transposed
Cma04g00758 Cma-Chr4:3866271 Cma12g00445 Cma-Chr12:2332098 3.19E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68478 PF00069 Pkinase 1.10E-55 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00758 K20537 - csv:101203896 470.314