Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00769 ATGGCCGGTTTTTTCCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACTACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATATGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGACTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGCCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGGGGAATTTTCCGATGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGGATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGTGCCCTCCTCATCACCGCCCCCACCACCACCATGGAATTGCCGCCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAA 792 54.55 MAGFFPLGGGREPNYHLPTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDATNLKRPRDNTAASSGLEMGNFPMEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPNSASPDGGALLITAPTTTMELPPISAALLDPPPPYPAPLNTYVAAGTQFFLPPTS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3906567 3908384 - CmaCh04G007690.1 Cma04g00769 291850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00769 263 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 259 IPR007818 GO:0003700|GO:0006355
Cma04g00769 263 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 79 121 IPR006510 -
Cma04g00769 263 PANTHER PROTEIN SHORT INTERNODES 1 259 - -
Cma04g00769 263 MobiDBLite consensus disorder prediction 191 218 - -
Cma04g00769 263 Pfam Domain of unknown function (DUF702) 78 199 - -
Cma04g00769 263 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 151 198 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01939 Cma-Chr1:12590607 Cma04g00769 Cma-Chr4:3906567 3.71E-57 dispersed
Cma03g00708 Cma-Chr3:5754845 Cma04g00769 Cma-Chr4:3906567 2.00E-70 dispersed
Cma04g00769 Cma-Chr4:3906567 Cma07g00452 Cma-Chr7:1973447 9.21E-69 dispersed
Cma16g00640 Cma-Chr16:3315182 Cma04g00769 Cma-Chr4:3906567 1.18E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34801 PF05142 DUF702 3.60E-52 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00769 - - bhj:120073083 379.793