Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00774 ATGAGAGTTCCTGTTTCCAATCACCAAATACCCTCTTCTTCTCCAAACCCTAAACTCAATTCCTCGCCCTCCGCCGTCGCCACCCCCACTCCCACCCCCACCTCCACCCCCAATATTACCAACCCCTGTTACGAACCCACCTCCGTCCTCGACCTCCGCCGCAGCCCCAGCCCTGTGGCGCCTGACCCCCACACCCTCTCCTCCGCTCCACTCCTCCCCACTGACGATCNTCCCAACGTCAACAACAACAACAACCCTTCTCTGGACTGGGATGAACAGGCCCTCCACAACCTCGACTGGGACTCCATCATGGGAGATTTGGGCTTGCACGATGACTCCAACTCTGCTCCCAAAAACCCAAACCCCGATCCCAATCCCAATCCCAATCCCAATAATCATGTTCCTCAATTCCCTGATTTCCTCCACTCCCACCCCTTCGATCATCAAACCCATCTGGTTTCCCCTGATTTCTTCCTCTCTGAACCCCCCTATTCCAACCACACCCCCACCTTCAATTCCTTCGATTTGGCGGCTCCCAATTCCAACAACTTCTCCTGCGAATTCCTTGAAGACATAGTCCGCACCGCTGATTGTTTCGATTCCAATGACTTCCAACTCGCCCACGTCATATTGGAGCGCCTCAATCAACGCCTTCAATCCTCCACCGGGAAGCCCGTTCAGCGGGCCGCCTTCTTCTTCAAAGAGGCTCTTCAATCTCTCCTCTCCGCCTCCAATCGCCACAATCGCCTCTCCTCCTGGCCCGAAATTGTTCATACAATCAGGGCTTACAAGGTCTTCTCTGCAATTTCTCCAATTCCCATGTTCTCTCACTTCACTACCAATCAGGCGCTTCTTGAAGCTCTTAACGGTTCGTCTTTCATTCATATTGTTGATTTTGATATTGGGTTTGGAGGGCAGTACGCGTCTTTCATGAAGGAGATTGCAGAGAAGGCAGAGTCCAGGAAGATGATTCCGCCGGTGCTACGGATAACGGCGGTGGTGCCGGAGGAATTTGCGATTGAGAGTAGGTTGATTAGGGAGAATCTGTGTCAGTTCGCTCAGGATCTGAAGATTCGGTTTCATATAGATCTGGTGCCGCTTCGGACCTTCGAGACGTTGTCGTTCAAATCGGTCAAGTTCATGGAAGGGGAGAAGGCCGCGATTTTATTAACGCCCGCGATCTTCCGCCGTCTTGGGAGTATAAACAGTATAGGGTCTTTTCTCTCCGACGTGCGACGGGTGTCGCCCTGCGTCGTCGTGTTCGTTAACGGTGAAGGGTGGTCGGACTCCGGCGCGGCGTCGTTCAAGAGAAATTTGGTAGATAGCCTGGAGTTCTACGCCATGATGCTAGAGTCGCTGGACGCAGCGGTGGCTGGCGGGGACTGGGTGCGGAGGATAGAGACGTTTGTGTTCCGGCCGAAGATATTGGCTGCGGTGGAAGGAGCAGGGAGAATGGCAGCGCCGCCGTGGAGGGAGGTATTCCACGGCGCCGGGATGAGGCCAGTGGCGCTGAGCCAGTTTGCAGATTTTCAGGCGGAGTGCTTACTTGGAAAAGTACAGGTTCAAGGGTTCCAAGTAGGAAAACGGCATGCTGAGCTGGTGCTGTGCTGGCACGAGAGGCCTCTGGTTGCCACGTCGGCGTGGAGGTGTTGA 1653 54.45 MRVPVSNHQIPSSSPNPKLNSSPSAVATPTPTPTSTPNITNPCYEPTSVLDLRRSPSPVAPDPHTLSSAPLLPTDDXPNVNNNNNPSLDWDEQALHNLDWDSIMGDLGLHDDSNSAPKNPNPDPNPNPNPNNHVPQFPDFLHSHPFDHQTHLVSPDFFLSEPPYSNHTPTFNSFDLAAPNSNNFSCEFLEDIVRTADCFDSNDFQLAHVILERLNQRLQSSTGKPVQRAAFFFKEALQSLLSASNRHNRLSSWPEIVHTIRAYKVFSAISPIPMFSHFTTNQALLEALNGSSFIHIVDFDIGFGGQYASFMKEIAEKAESRKMIPPVLRITAVVPEEFAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFETLSFKSVKFMEGEKAAILLTPAIFRRLGSINSIGSFLSDVRRVSPCVVVFVNGEGWSDSGAASFKRNLVDSLEFYAMMLESLDAAVAGGDWVRRIETFVFRPKILAAVEGAGRMAAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVQGFQVGKRHAELVLCWHERPLVATSAWRC 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3941102 3942754 - CmaCh04G007740.1 Cma04g00774 291855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00774 550 MobiDBLite consensus disorder prediction 119 133 - -
Cma04g00774 550 MobiDBLite consensus disorder prediction 1 147 - -
Cma04g00774 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 549 IPR005202 -
Cma04g00774 550 PANTHER SCARECROW-LIKE PROTEIN 15 15 549 - -
Cma04g00774 550 Pfam GRAS domain family 191 549 IPR005202 -
Cma04g00774 550 ProSiteProfiles GRAS family profile. 179 549 IPR005202 -
Cma04g00774 550 MobiDBLite consensus disorder prediction 72 91 - -
Cma04g00774 550 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00774 Cma-Chr4:3941102 Cma16g01144 Cma-Chr16:8784996 6.43E-70 dispersed
Cma16g00649 Cma-Chr16:3374122 Cma04g00774 Cma-Chr4:3941102 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34804 PF03514 GRAS 1.50E-89 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00774 - - cpep:111811752 989.949