Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00778 ATGGTCCGCGTAGACTTTGACGAAATCGCACAGCCAAATAAACGCTATGATTCTTCTTATTCACGGTGCTCTTTGTTATTAATTACCCCTCCGATTCTCTCCGCCAAAAACGCCTCTCTCTCGCTCTACGATTCCGATTTTCATCGCCTGATCACCGATCATTTCCCAAACTATCCTATATCTTCCCAAATTCTTCGCAGTTACAGTTCCAATCTGATTCCAATTCCTCCGTCGTTATTTCATTTTGATTCTCCGGAAGAGCTTGAAGAACTCAGAGTTTATTGCATTAAACAGATCGACTCTGTTCTTGCCAGGACAAAATGGGCATCCAGGACATTCAAATCCGTCTCGAAAGACTGGAACCAATGGATCTCTTCTCCCTTCCTCGCCCACCAGCAAGCCATTCACTTCACCAAAACCTCCGGCTTCTTCTCCCAATCCAACAGCCAAGACTGCTTCTTCATCCCTCTCGACCCCCACTCCCATGGCGTCCCATTCCCTTCCCTTTCCTTCCTCCCTGAATCCACTTCCATCCGAACCACTTCCAACGGCCTCCTCTGCTGCCAAAGCACTTTCCAGGACAGCATCTATTTCATATGCAACCCCGCTACTATGGAATGGAGACAGCTCCCCGAGCCCTCTCTGCTTCATGGCCATGTCTCTGCCATTGCCCTTGCTTTCACTCTCTCCACTTTCAACTTTGAATCCCAGTTCCAGATTGTCTGTGCTGTCCCCTTTCATTCCGTCAAAGCTGTTTACTTTGAGATCTACTCTTCTAGGACCAACACTTGGAAAATTTCTGACTCCCAATACTTCTATGCTGGCGATGGTGATTTGATGTTCAAAGGGGACGGATTTTGTATTGGTGAAACCGTGTATTGGGAGACGTCAAACGGCGTCATACTGGGGTTTGATTTGAAATATGAAGTATATGGGGAGATTCAGCTCCCTCTCCCTCCCGGCCATGGAGCTATAACGGAGATCCGTGGAGAGATGTGCTATGCTATGGTAATAACTTGTAACAGTGAGAATGATGAAGCGGGTGCTTATTCGCTTGGCATTTATGGTGGTCATGACATGGTGTTGAAGCATCGATTTCCTCTCGATGTTGGGAGTTATTTGGGAGAGGATTTTGATGGAGAGGTTAGAGTATTATCGTGTGTAAGTGATGGCATGGCGATGATTCTTGTGGGGAGCAATGTGATTCTGTATGATGTGGAAAAAAGGAAAGGGGAGATTGTGAAAAAATTAGTCGATCTGCCAGATCGTGCCAGTGCGGGGCGGTTTCTGCCGTACGTGAATAGCCTTGTGAGGGTGTGTCCGGTGGAGAGGATGCCGCGGGAGGATCATGATTTACAAGAAGTTTTGAGAAACACGAGCGAGTTGGTTGGGTTTGGAGACCATTGGATTACGCAATCCAAAAGGGGGTCTCCTCTAATTTTCTCTCAAGGGATTCTCAATTTGAGGCTCATTTTCCTCCCCTTCTTCCCTCTTTCTCCAAAAGGGTTTTGTATGAAAGCTGGTGAAATTTCCGGCGACAATATTTGGTGCTTAATCTCCATTCCGTCTTCGTCGTCCTCGTCCTCGTCCTCGTTCTCCTCATGGTCATCGTCGTCGTTTTCGTCTTCCTTCTCACCGCCATCACCATCATTTCCTGATTTCGACCCCGATCGCTCTACGCCATCAGATGATAATAACTTCGATGAATCTCCAGCACCAAAGTCATCAAAGGACTCTTCCAAGGATACAAATTCGGGTAAATCTTCAAAAGCGCCAAGCCCGCGGTCATCGACGCCGATTGCTTCAAAATCTCCTTCACCGCGATCTTCCTCATCTTCAAAAGATGCATTGACCTCGGGAGATCGGACGGAGGGGAAATCATCACACAAATCATCACACAAATCATCGAACAATGATGATTCAGGGTCGTCGGATGTGAGTCCAGGAGTTATAATTGGAGTGGCGGTGGGGGTGGGATTGTTCATAATTCTTCTCATATCATTAATTGCTCTGTGCTCCAAGAAGAGGAAGAGGAAGGAAGATCCTATGTCGTACTATAGTGGAGATAATGCGAATGGACCTAAAGATGCAGGTGGTAACTATTACAACGGTTCACAAAAACCAAATTGGCACATCAACAACAACGCAGGGGGGGGTCCGGGCGGGAACGGGTGGCCGCCCATGAGTAGTGAGAACATGACCACAAGCGGTAGTTTTACAGGGCCTCCTCTTCCTCCACCATCGCCATCCCTTGCGTTCGGGTTCAGCAAGAGCACGTTCACGTACGACGAGCTTGCAGCAGCAACGGGAGGGTTCGCGCACGGCAACCTGCTTGGGCAGGGGGGGTTCGGATACGTGCACAAGGGGGTGTTGCCCAACGGGAAAGAGGTGGCGGTGAAGAGCCTCAAGGTGGGAAGCGGGCAGGGGGAGAGGGAGTTCATGGCTGAGGTTGAGATTATTAGTAGAGTCCACCATCGCCATTTGGTGTCCTTGGTTGGCTTTTGCATTGCCGGTGGACAGAGAATGTTGGTCTATGAGTTTGTTCCTAACAACACCTTGGAGCATCACCTTCATGGTAAAGACCTCCCTGTAATGGATTGGCCAACCAGGCTTCGTATTGCCATAGGTTCTGCCAAGGGTCTTGCTTACCTTCACGAAGATTGTCATCCAAAAATTATTCATCGGGATATCAAATCCGCTAATATTCTAATTGATGCCAACTTCGAAGCAATGGTGGCGGATTTTGGATTGGCTAAGTTGTCTTCAGATACTAACACTCATGTCTCCACCAGGGTTATGGGTACATTTGGGTATTTAGCGCCAGAATATGCATCAAGTGGGAAGCTAACGGAGAAGTCCGACGTGTTCTCATTTGGTATAATGTTATTGGAACTCATTACTGGAAAACGACCGGTTGATCATAATAATGTTATGGAGGATAGCTTAGTAGATTGGGCACGAGCGATTATTAGCGGGGAAATGGGAGAAGATGTATACGAAGTGCTGGTGGATAAGCGATTAGGAAAGGAGTTCAATACTCAGGAGATGGGGCGCATGGTATCATGTGCTGCAGCCTCCATCCGTCACTCCGCTAGAAAACGCCCCAAAATGAGCCAAGTAGTACGAGCCCTAGAAGGGGATTATTCATTGGACGACCTAAACGACGGGATAAGACCAGGTCAAAGCTCAATTTACAGTGTGGCAGGCTCGGACTATGATTCAAATGCGTACCAAGCCGACATGTCGAGATTCAGGAAACTAGCTTTGTCAGACGACAGCAAACCAATATTACTCAGACCGTGCAGATTCTCCGCCAAACATCACGACGATCCATTTTCCCGGGTCGTTTCCCTGAATCTCACTAGGGCACTAGAGTTTGTTCGATTTTATGTTGCGCATTTGGTTCGTTCTTCTTCCAGATTTTCTTCTTTGTATTTGTTGAGTGGGCTGACAATGGCTGTCGAGGAGAAACCACGAGCTGATAATTCTGCAGAGTCCCCGACTTCGGTTCTGGAAAACGAGGATTTGTCTAATGGGGAAAATGAGATCAAGTTGGAGGAAGAGATAATTTTGGAAGCAAAAATTGGGGATTCCAGCTTTATATCAAAAGAGATGGCGGAAGAGGAGCAGAAATTGCTGGAAGCTCTGAATGGAGTGGAGGAGGACAAGAAATCTGTTGGGAAAAGTTGTGGGCGTGGTTCGAAGAGTAAAGCTTCTGCACGTTGTAATAATAGGAAGGCAAAAAGGGCTGTTGCAGCTATGCTGACTAGATCGAAAGAAGGTGAGCGGGATGAAGATGTAAACTTGACCGAGGAAGAAAGCATAGAAAAGGAGCAGAGTGAACTCGTACCTCTGTTGACTGGTGGTAAATTGAAGTCCTACCAACTCAAGGGTGTCAAATGGTTGATTTCATTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACGATTGCCTTCATTTCACATCTGAAAGGGAAGGGACTGGATGAACCTTACTGA 4029 47.26 MVRVDFDEIAQPNKRYDSSYSRCSLLLITPPILSAKNASLSLYDSDFHRLITDHFPNYPISSQILRSYSSNLIPIPPSLFHFDSPEELEELRVYCIKQIDSVLARTKWASRTFKSVSKDWNQWISSPFLAHQQAIHFTKTSGFFSQSNSQDCFFIPLDPHSHGVPFPSLSFLPESTSIRTTSNGLLCCQSTFQDSIYFICNPATMEWRQLPEPSLLHGHVSAIALAFTLSTFNFESQFQIVCAVPFHSVKAVYFEIYSSRTNTWKISDSQYFYAGDGDLMFKGDGFCIGETVYWETSNGVILGFDLKYEVYGEIQLPLPPGHGAITEIRGEMCYAMVITCNSENDEAGAYSLGIYGGHDMVLKHRFPLDVGSYLGEDFDGEVRVLSCVSDGMAMILVGSNVILYDVEKRKGEIVKKLVDLPDRASAGRFLPYVNSLVRVCPVERMPREDHDLQEVLRNTSELVGFGDHWITQSKRGSPLIFSQGILNLRLIFLPFFPLSPKGFCMKAGEISGDNIWCLISIPSSSSSSSSSFSSWSSSSFSSSFSPPSPSFPDFDPDRSTPSDDNNFDESPAPKSSKDSSKDTNSGKSSKAPSPRSSTPIASKSPSPRSSSSSKDALTSGDRTEGKSSHKSSHKSSNNDDSGSSDVSPGVIIGVAVGVGLFIILLISLIALCSKKRKRKEDPMSYYSGDNANGPKDAGGNYYNGSQKPNWHINNNAGGGPGGNGWPPMSSENMTTSGSFTGPPLPPPSPSLAFGFSKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKDLPVMDWPTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLELITGKRPVDHNNVMEDSLVDWARAIISGEMGEDVYEVLVDKRLGKEFNTQEMGRMVSCAAASIRHSARKRPKMSQVVRALEGDYSLDDLNDGIRPGQSSIYSVAGSDYDSNAYQADMSRFRKLALSDDSKPILLRPCRFSAKHHDDPFSRVVSLNLTRALEFVRFYVAHLVRSSSRFSSLYLLSGLTMAVEEKPRADNSAESPTSVLENEDLSNGENEIKLEEEIILEAKIGDSSFISKEMAEEEQKLLEALNGVEEDKKSVGKSCGRGSKSKASARCNNRKAKRAVAAMLTRSKEGERDEDVNLTEEESIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFISHLKGKGLDEPY 1342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3963160 3970856 + CmaCh04G007780.1 Cma04g00778 291859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00778 1342 SMART serkin_6 772 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00778 1342 MobiDBLite consensus disorder prediction 557 584 - -
Cma04g00778 1342 MobiDBLite consensus disorder prediction 1157 1178 - -
Cma04g00778 1342 MobiDBLite consensus disorder prediction 585 618 - -
Cma04g00778 1342 ProSiteProfiles Protein kinase domain profile. 772 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00778 1342 Pfam SNF2-related domain 1294 1331 IPR000330 GO:0005524|GO:0140658
Cma04g00778 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1263 1337 IPR027417 -
Cma04g00778 1342 CDD STKc_IRAK 778 1046 - -
Cma04g00778 1342 Coils Coil 1202 1222 - -
Cma04g00778 1342 MobiDBLite consensus disorder prediction 542 646 - -
Cma04g00778 1342 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 523 1094 - -
Cma04g00778 1342 Gene3D - 1259 1341 IPR038718 -
Cma04g00778 1342 SUPERFAMILY Protein kinase-like (PK-like) 745 1044 IPR011009 -
Cma04g00778 1342 Pfam Protein tyrosine and serine/threonine kinase 775 1044 IPR001245 GO:0004672|GO:0006468
Cma04g00778 1342 Gene3D Transferase(Phosphotransferase) domain 1 848 1054 - -
Cma04g00778 1342 MobiDBLite consensus disorder prediction 679 699 - -
Cma04g00778 1342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Cma04g00778 1342 Gene3D Phosphorylase Kinase; domain 1 749 847 - -
Cma04g00778 1342 MobiDBLite consensus disorder prediction 715 742 - -
Cma04g00778 1342 MobiDBLite consensus disorder prediction 619 636 - -
Cma04g00778 1342 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 523 1094 - -
Cma04g00778 1342 ProSitePatterns Protein kinases ATP-binding region signature. 778 800 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00778 Cma-Chr4:3963160 Cma10g00621 Cma-Chr10:2859964 4.38E-171 dispersed
Cma10g00475 Cma-Chr10:2153636 Cma04g00778 Cma-Chr4:3963160 1.39E-17 dispersed
Cma18g01062 Cma-Chr18:8802449 Cma04g00778 Cma-Chr4:3963160 3.57E-126 dispersed
Cma04g00778 Cma-Chr4:3963160 Cma12g01250 Cma-Chr12:9778780 1.42E-172 transposed
Cma04g00778 Cma-Chr4:3963160 Cma20g00855 Cma-Chr20:4104105 7.84E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34805 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Cma TR
68479 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00778 - - cmos:111447691 895.96