Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00780 ATGTTTCACCCACTGCTCATACTCTGTTTTCTCCCATCTCTTTTAGCTCTCTTCCTCTTCCTGATTCTGCTTCGGAGGAAGAGAAATGCCGTCGATCTTCCTCCCGGGAACATGGGATGGCCGTTTCTCGGTGAGACCGTCGGGTATCTCCGCCCATACTCCGCCACCACCATCGGAGATTTCATGAAGAATCACATCACCAGATATGGTAAAGTGTATAAGTCGAACCTGTTCGGAGAGCCGACGGTGGTGTCGGCCGATGCTGTACTGAACCGGTACATACTGCAGAACGAAGGACGGCTGTTTGAATGTAGCTACCCGAGGAGCATCGGCGGGATCCTTGGGAAATGGTCGATGCTGGTTACGGTCGGCGACATGCACCGGGATATGAGAATGATATCGCTCAACTTTCTGAGCCAGAGTAGGCTTAAGACTCATCTCTTGAAGGAGGTTGAGAACCAGACTCTGCTCGTCCTTCGTTCTTGGAAAGATTCCTCAACGTTTTTGGCGCAGGACGAAGCCAAAAGGTTCACTTTCAATTTGATGGCGAAACACATCATGAGTTTGGATCCGTGGAAGTTGGAGACGGAGATGTTGAAGAAGGAGTATGTTACTTTCATGAAAGGAGTGATTTCTCCGCCACTGAATCTACCAGGAACGCCGTACAGAAGAGCTTTGAAGTCTCGGTCGACGATCTTGAAGTTCATCGAGCGGAAAATGGAGGAACGGAAGTTGAAAATAGACGCCGATGGCGGAGATTTCGAGGAAGACGATCTACTCGGCTGGGCATTGAATCACTCAAATCTCTCAACGGAGCAAATCCTCGACTTGATTCTTAGCCTACTGTTCGCCGGCCACGAGACGTCGTCGGTCTCCATAGCTTTAGCCATCTTCTTCCTCTCCGGCAGCCCAGCCACCGTCCAACAGTTGACGGAAGAACACCTGGAGATCGCCAGAGGCAATAAGCGATTGGGAAAGACGGAATTGGATTGGGAAGATTACAAGAAAATGGAATTCACGCAATGTGTGATTAACGAGACGCTTCGGCTTGGAAACGTGGTGAGATTTCTTCACAGAAAGGCACTGAAGGATGTACGGTACAGAGGTTATTTCATTCCACGTGGATGGAAAGTGCTGCCTGTGATATCTGCAGCGCATTTGGATCCTTCAGTTTTTGACCAACCTCACAACTTTAATCCATGGAGGTGGCAGCAACTGAATGGATTGCCATCGAGTGCGACGATAACCAATAACTTCATGCCATTTGGAGGCGGACCGCGACTATGCACTGGTTCAGAACTAGCCAAGCTTGAAATGGCCATTTTTATTCATCATTTGGTCTTGAACTACGAATGGGAATTGGTGGGTTCAGATCAACCTTTTGCTTACCCTTTTGTTGACTTCCCTAAAGGTCTGCCGATCAGGATCCGCCACCACACTCTTGTGTAA 1449 48.93 MFHPLLILCFLPSLLALFLFLILLRRKRNAVDLPPGNMGWPFLGETVGYLRPYSATTIGDFMKNHITRYGKVYKSNLFGEPTVVSADAVLNRYILQNEGRLFECSYPRSIGGILGKWSMLVTVGDMHRDMRMISLNFLSQSRLKTHLLKEVENQTLLVLRSWKDSSTFLAQDEAKRFTFNLMAKHIMSLDPWKLETEMLKKEYVTFMKGVISPPLNLPGTPYRRALKSRSTILKFIERKMEERKLKIDADGGDFEEDDLLGWALNHSNLSTEQILDLILSLLFAGHETSSVSIALAIFFLSGSPATVQQLTEEHLEIARGNKRLGKTELDWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYRGYFIPRGWKVLPVISAAHLDPSVFDQPHNFNPWRWQQLNGLPSSATITNNFMPFGGGPRLCTGSELAKLEMAIFIHHLVLNYEWELVGSDQPFAYPFVDFPKGLPIRIRHHTLV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3975123 3979234 - CmaCh04G007800.1 Cma04g00780 291861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00780 482 Gene3D Cytochrome P450 24 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 Pfam Cytochrome P450 34 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS P450 superfamily signature 284 301 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS P450 superfamily signature 342 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS P450 superfamily signature 420 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS P450 superfamily signature 429 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 SUPERFAMILY Cytochrome P450 29 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PANTHER CYTOCHROME P450 90B1 16 456 - -
Cma04g00780 482 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS E-class P450 group I signature 273 290 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS E-class P450 group I signature 341 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS E-class P450 group I signature 381 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS E-class P450 group I signature 419 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PRINTS E-class P450 group I signature 429 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00780 482 PANTHER CYTOCHROME P450 26 16 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00780 Cma-Chr4:3975123 Cma04g02669 Cma-Chr4:18119812 6.04E-121 dispersed
Cma18g00116 Cma-Chr18:574413 Cma04g00780 Cma-Chr4:3975123 8.76E-87 dispersed
Cma04g00780 Cma-Chr4:3975123 Cma04g01122 Cma-Chr4:5801740 3.77E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00780 K09587 - csv:101211854 872.463