Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00784 ATGGCGTATATGTGCGCAGACAGTGGCAATCTAATGGCAATTGCCCAACAAGTCATCAAGCAGAAACAACAGCAGGAGCAGCAGCAGCAGCAGCAGCTTTGTCCGCTTACCCCCTTTTCGCTTCTTCCTTGGACTACTACCAATTCTTCTCCAACAATGGCTTCTTCTTCTTCTTCTCCTAATTTATCCTTTGGGGTTTCTGGTTCTGCCTTCACTGACCCCTTCCAGGTCGCCGGAGATGCGGATTCTGCTGAGCCGGCTTTTCATTTTCCCAATTTGGAGCATCCATCTGCTGGGTTTAGGTTCTTTCCTAACTTCGGCGGTGGGGAGTTCGACTCTGATGAGTGGATGGATAGTTTGGTCGGCGGTGGAGATTCGACGGATAGCTCTACTCTGCCGTCTGGTTGTGATGCTTATGCCGAGTATGGTCTCTTTGGTGTGGATCTCTTTAATGGCTCCCCGAGTCGACTCGTTGTCGCTAGCTCCCCGCCGTCTGATTTTAACCGAGCTGTTCTACCGGAAAGTTCGTGCAACACAAGTACCGTTCCGCCGCCGCCGTGGAGTTCTCCTCCACCATCAGTAAAGGATGTTAGAGTAGCCAATCCACCGGCGGAGAAACTGCAGACGAACGACGTTGTAGAAGCCTCGTCGAACGCGCCTGAAGAGGTTTTGCCGTCGCCGCCACCGCCGCTTCTTAAAGTCTTGCTGGATTGTGCACGGCTCTGTGATTCCGAGCCCGACAGTGCCGTAAAAACTCTCGATCGGATCGGTAAATCGTTGCTAGAACATGGAGATCCGATTGAGCGAGTGGCGTTTTACTTCGGCGAAGCTCTTCGGAACAGATTATCCCCGGCGGCGAGGAACAATTTCTTGGATTCAATTGAGACCGATGCTAATTCCGAAGATTTCTTGCTATCGTACAAAGCCCTGAACGACGCTTGTCCTTACTCCAAGTTCGCGCATCTCACGGCGAACCAAGCAATCCTGGAAGCTACACAGAGAGCCAGTAAAATTCACATTGTCGACTTCGGAATCGTTCAGGGCGTTCAATGGGCGGCGCTTCTGCAAGCTTTGACCACGCGAGCCACCGGAAAGCCTATCAAAGTTCGTATCTCCGGAATACCTGCACCATCGCTCGGGGAATCTCCAGCGGCATCGCTGTACGCCACCGGCAATAGACTCTCCGAGTTCGCAAAGCTTCTGGAACTGAATTTCGAGTTCGAACCGATTCTAACGCCGATTGAGGATCTGAACAAATCGAGCTTCAGCATCCAATCGGACGAGGTATTGGCGGTGAATTTCATGCTTCAATTGTACGGTCTCCTCGACGAGGTTCCGGTTGGTGTTCATAGTGCTCTCCGATTAGCGAAATCGCTAAGCCCTAACATTGTGACTCTCGGCGAGTACGAGGCGAGTTTGAACCGGACTGGATTCTACAGTCGCTTCAAAAACGCATTGAAATACTACTCCGCCATTTTCGAATCGCTAGAGCCAAACCTGCCTCGAGACTCGCCGGAAAGGCTCCAATTAGAGAAACTGTTGATCGGTCGTCGAATCGCCGGCGTCATTGGAATGGAAGAAGAATCAGGAAGCAAGAGAAGAGTACGCATGGAAGACAAAGAAGAATGGAAGAATTTGATGGAGAGCTCCGGATTCGAACCTGTAGCACTCAGCCATTACGCCATTAGTCAGGCGAAGATACTTCTATGGAACTACAATTACAATTCTCTCTACTCTCTGATCGAATCGGCACCGGAATTTCTTTCTCTGGCATGGAACGACGTACCTCTCTTAACTGTATCTTCCTGGCGTTGA 1815 50.8 MAYMCADSGNLMAIAQQVIKQKQQQEQQQQQQLCPLTPFSLLPWTTTNSSPTMASSSSSPNLSFGVSGSAFTDPFQVAGDADSAEPAFHFPNLEHPSAGFRFFPNFGGGEFDSDEWMDSLVGGGDSTDSSTLPSGCDAYAEYGLFGVDLFNGSPSRLVVASSPPSDFNRAVLPESSCNTSTVPPPPWSSPPPSVKDVRVANPPAEKLQTNDVVEASSNAPEEVLPSPPPPLLKVLLDCARLCDSEPDSAVKTLDRIGKSLLEHGDPIERVAFYFGEALRNRLSPAARNNFLDSIETDANSEDFLLSYKALNDACPYSKFAHLTANQAILEATQRASKIHIVDFGIVQGVQWAALLQALTTRATGKPIKVRISGIPAPSLGESPAASLYATGNRLSEFAKLLELNFEFEPILTPIEDLNKSSFSIQSDEVLAVNFMLQLYGLLDEVPVGVHSALRLAKSLSPNIVTLGEYEASLNRTGFYSRFKNALKYYSAIFESLEPNLPRDSPERLQLEKLLIGRRIAGVIGMEEESGSKRRVRMEDKEEWKNLMESSGFEPVALSHYAISQAKILLWNYNYNSLYSLIESAPEFLSLAWNDVPLLTVSSWR 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3996533 3998347 + CmaCh04G007840.1 Cma04g00784 291865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00784 604 Coils Coil 12 32 - -
Cma04g00784 604 MobiDBLite consensus disorder prediction 171 195 - -
Cma04g00784 604 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 232 603 - -
Cma04g00784 604 Pfam GRAS domain family 232 604 IPR005202 -
Cma04g00784 604 ProSiteProfiles GRAS family profile. 222 604 IPR005202 -
Cma04g00784 604 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 603 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00756 Cma-Chr3:5947647 Cma04g00784 Cma-Chr4:3996533 0 dispersed
Cma04g00784 Cma-Chr4:3996533 Cma07g00493 Cma-Chr7:2130556 0 dispersed
Cma16g00656 Cma-Chr16:3424282 Cma04g00784 Cma-Chr4:3996533 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34807 PF03514 GRAS 5.60E-106 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00784 - - cmax:111479082 1106.66