Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00791 ATGAACGGCCACAAGCGAAACCCTACCACCGCCACAATCAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGGTGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTTCAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAAGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCAGCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTTCAGCCGAACCGATTATTGGCGGGAAATCCGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTAGGGGCTCATAATCATAATCACAACCATCACCCAGGAAATCAAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGGAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 699 48.93 MNGHKRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHENEGNRGRAMAAHLQQSSGW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4031415 4032113 - CmaCh04G007910.1 Cma04g00791 291872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00791 232 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 191 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma04g00791 232 Gene3D Histone, subunit A 23 148 IPR009072 GO:0046982
Cma04g00791 232 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 18 191 - -
Cma04g00791 232 Coils Coil 105 132 - -
Cma04g00791 232 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma04g00791 232 SUPERFAMILY Histone-fold 33 137 IPR009072 GO:0046982
Cma04g00791 232 MobiDBLite consensus disorder prediction 1 33 - -
Cma04g00791 232 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Cma04g00791 232 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Cma04g00791 232 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Cma04g00791 232 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00791 Cma-Chr4:4031415 Cma20g00686 Cma-Chr20:3142972 4.05E-62 dispersed
Cma10g01088 Cma-Chr10:7192352 Cma04g00791 Cma-Chr4:4031415 1.34E-33 transposed
Cma16g00666 Cma-Chr16:3471267 Cma04g00791 Cma-Chr4:4031415 1.10E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34808 PF00808 CBFD_NFYB_HMF 1.10E-26 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00791 K08065 - csv:116406241 360.147