Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00791 | ATGAACGGCCACAAGCGAAACCCTACCACCGCCACAATCAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGGTGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTTCAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAAGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCAGCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTTCAGCCGAACCGATTATTGGCGGGAAATCCGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTAGGGGCTCATAATCATAATCACAACCATCACCCAGGAAATCAAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGGAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA | 699 | 48.93 | MNGHKRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHENEGNRGRAMAAHLQQSSGW | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4031415 | 4032113 | - | CmaCh04G007910.1 | Cma04g00791 | 291872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00791 | 232 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 18 | 191 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cma04g00791 | 232 | Gene3D | Histone, subunit A | 23 | 148 | IPR009072 | GO:0046982 | |
Cma04g00791 | 232 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 | 18 | 191 | - | - | |
Cma04g00791 | 232 | Coils | Coil | 105 | 132 | - | - | |
Cma04g00791 | 232 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 67 | 83 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cma04g00791 | 232 | SUPERFAMILY | Histone-fold | 33 | 137 | IPR009072 | GO:0046982 | |
Cma04g00791 | 232 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cma04g00791 | 232 | PRINTS | CCAAT-binding transcription factor subunit A signature | 64 | 82 | - | - | |
Cma04g00791 | 232 | PRINTS | CCAAT-binding transcription factor subunit A signature | 83 | 101 | - | - | |
Cma04g00791 | 232 | PRINTS | CCAAT-binding transcription factor subunit A signature | 102 | 120 | - | - | |
Cma04g00791 | 232 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 36 | 100 | IPR003958 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00791 | Cma-Chr4:4031415 | Cma20g00686 | Cma-Chr20:3142972 | 4.05E-62 | dispersed | |
Cma10g01088 | Cma-Chr10:7192352 | Cma04g00791 | Cma-Chr4:4031415 | 1.34E-33 | transposed | |
Cma16g00666 | Cma-Chr16:3471267 | Cma04g00791 | Cma-Chr4:4031415 | 1.10E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34808 | PF00808 | CBFD_NFYB_HMF | 1.10E-26 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00791 | K08065 | - | csv:116406241 | 360.147 |