Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00792 ATGAAGAAGCGGCTGAATTGGGTTTTGGTCTTGCTTTTGTTCATCTTTGTTGGCAAATTCTGTGCGAACGTCTCTGCTACTGTAGAAGCTACTGCACTTCATGTATTTCGATCCAATTTGGAAGATCCAAACAATGTTCTTCAGAGTTGGGATCCCACCCTTGTGAACCCCTGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATCATAAGAGTTGACCTTGGAAATGCTGGATTGTCTGGTAGATTAGTTCCGCAGCTTGGTCAACTTAAAAGCCTTCAATACTTGGAGCTTTATGGCAACAACATAAGTGGAGACATTCCAATTGATCTTGGGAATCTGGAAAACTTGGTGAGCCTAGACCTATACTTGAACGCGTTAACTGGTCCGATTCCCGACACGTTTGGCAAGCTCACACAATTGCGTTTCCTGTATGAACATTCATCCTTTACTGATAGTCGGCTAAATGACAACAAACTATCGGGATCGATACCGATGTCCTTGACTAATATTTCCACCCTGCAAGTCTTGGATCTATCGAACAACCTTTTATCTGGAAGGGTTCCAAATAATGGCTCATTTTCACTCTTTACTCCCATTAGTTTTGCAACTAACTTGGATCTATGCGGTCTGGTAACCGGGAAGCCCTGCCCCGGGGATCCTCCTTTTTCTCCTCCGCCACCATTTGTTCCACAGTCGACATTTTCTTCCTATGAGGTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTGGCCGCTGGTGCTGCTTTACTTTTTGCAACTCCAGCTATCATATTCGTCTATTGGCATCGGCGGAGATCACGAGAGATATTTTTTGATGTTCCTGCGGAAGAAGATTCAGAGCTCAACTTGGGGCAGCTGAAAAGATTTTCTCTGAGAGACTTGCAAGTTGCCACAGATAACTTCAGCAACAAAAATATTCTTGGTCGAGGTGGATTCGGTAAAGTGTACAGGGGTCGCCTGGCTGATGGCTCGTTAGTAGCAGTAAAACGGCTTAAAGAAGAGCGTACTCCGGGTGGAGAGTTGCAGTTCCAAACAGAAGTAGAGATGATTAGCATGGCTGTGCATCGAAATCTCTTGCGACTACATGGATTTTGTACAACAACAACCGAACGCCTCCTTGTTTATCCTTATATGGCTAACGGAAGTGTTGCATCATGCTTAAGAGAACGTCCACAATCCGAAGCTCCTCTTGACTGGCCAACTCGAAAGAAAGTTGCATTAGGCTCTGCAAGGGGTCTTTCTTACTTACACGATGGATGTGATCCAAAAATCATCCATCGTGATGTGAAAGCTGCGAACATTTTACTGGATGAGGAGTTCGAGGCTGTCGTCGGTGATTTTGGTCTTGCAAAACTAATGGACTACAAGGACACCCATGTTACAACAGCAGTAAGAGGTACTATTGGACATATAGCTCCGGAGTATCTCTCAACTGGGAAGTCATCTGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTGTTGGAGCTCATAACTGGGCAGAGGGCGTTCGATCTTGCTCGACTTGCGAACGATGAAGATGTTATGCTGCTTGATTGGGTAAAAGGCCTTCTGAAAGAGAAAAAGTTGAAGATGTTGGTTGATCCTGATCTGAGGGACAATTATGATGAAATAGAAGTTGAGCAAATCATCCAAGTAGCACTTCTCTGCACACAGAGCTCACCCATGGAACGACCAAAAATGTGTGAGGTGGTCAGAATGCTTGAAGGTGATGGCTTAACGGAGCGATGGGAGGAATGGCAGCGAGTCGAGGTAGTCTACCACGAAACCGAATTGGCATCTTCTCAAACTTCTGAATGGATGGTCGATTCAGCCGAAAATGTTCGTGCTTTCGAATTATCAGGTCCTAGCCTCACACAGAGCCGCCATTTCCGGCAGAAACGCCGAAATCTCTCTTCATTTCGGAGCTCAGAGGGATCGCCCATGGCGTTTCAGAGCCAAATCTTCAAGAACGCTCTACGAGAGGCCAACTCGAAGGCGTTCAATGGCCGTTATCGTTTTTCCTCTTCGGTTCGTTCTGCTTCCTCTGCTACGGCGGCTGCCGACCTCAAACCTCTGCTTCCGCCGTTTGATTACGAGCCGAAGCCTTACAACGGACCTCTCACCGATGAAATTTTCCAGAAGCGGAAGAAGTTTCTTGGCCCTTCGCTTTTCCACTACTACCAGAAGCCGCTCAATATTGTAGAAGGAAAAATGCAATATTTGTTCGATGAAAATGGAAGGCGTTACCTTGATGCTTTTGCTGGAATAGTTACTGTGTCTTGTGGGCATTGCCACCCCGATGTTTTAGCCGCAGTGAATGAGCAGAACAAACTTCTACAGCATGCTACAACTATATACCTACACCATGCAATCGCGGATTTTGCCGAAGCATTGGCAGCAAAAATGCCTGGAAACTTGAAGGTTGTATATTTTGTGAACTCTGGGACAGAAGCAAATGAATTAGCCATGCTTATGGCCCGTCTATACAGTGGTAATCTTGGTATGATTGCATTGAGAAATGCATACCATGGAGGAAGTTCCAACACAATTGGTCTGACAGCTTTGAACACATGGAAGTACCCAATACCTCAGGGAGAAATTCATCACGTTGTAAATCCCGATCCATATCGAGGAGTCTTCGGGTCAGATGCTTCTAGCTATGTCAAAGATATTCAAGATCATATAGATTATGGTACTTCAGGAAGAGTTGCTGGATTTATAGCCGAAACAATTCAGGGTGTTGGAGGAGCTGTTGAATTAGCACCTGGATACTTGAAACATGTTTATGACATTGTTCGCAAGGCTGGTGGTGTTTGCATTGCGGATGAAGTTCAAACTGGCTTTGGTCGTACAGGAAGCCATTATTGGGGCTTTGAAACACAGGGTGTGATTCCTGATATAGTAACCATGGCAAAGGGTATTGGCAATGGTTTACCATTGGGCGCAGTGGTGACAACGCCTGAAATAGCGAGCACAATGGCTCAAAAAATTCAGTTCAACACTTTTGGAGGGAACCCAGTTTGCTCTGCTGGGGGACTTGCAGTTCTAAGAGTTATTGACAAAGAGAGGCGTCAAGAACATTGCGCCGATGTCGGTTCACACTTGCTGAAGCGATTGAGATCTCTCCAGGAAAAATATGAAATCATAGGAGATGTACGGGGAAGGGGATTAATGGTAGGTGTAGAGCTCGTTACCGACCGGAAGGACAAAACCCCAGCAAAGACCGAAACTGCAGTATTGTTCGAGAAACTAAGAGAACTGGGCATCCTCGTCGGGAAAGGAGGTCTGCATGGCAATGTTTTTCGAATAAAGCCCCCCATGTGTTTCACCAAAGATGATGCAGTGTGTATTCTAGAAATGAAGTTTCTGAAGGAAAGATGTCTTACACTCGTACTCCTTTCAAAATGTGCAGACTTTCTTGTTGATGCTTTGGACTATGCCATGTTAAAACTGTAA 3489 45.0 MKKRLNWVLVLLLFIFVGKFCANVSATVEATALHVFRSNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGRLVPQLGQLKSLQYLELYGNNISGDIPIDLGNLENLVSLDLYLNALTGPIPDTFGKLTQLRFLYEHSSFTDSRLNDNKLSGSIPMSLTNISTLQVLDLSNNLLSGRVPNNGSFSLFTPISFATNLDLCGLVTGKPCPGDPPFSPPPPFVPQSTFSSYEVNNPNGAIVGGVAAGAALLFATPAIIFVYWHRRRSREIFFDVPAEEDSELNLGQLKRFSLRDLQVATDNFSNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTTTERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLKMLVDPDLRDNYDEIEVEQIIQVALLCTQSSPMERPKMCEVVRMLEGDGLTERWEEWQRVEVVYHETELASSQTSEWMVDSAENVRAFELSGPSLTQSRHFRQKRRNLSSFRSSEGSPMAFQSQIFKNALREANSKAFNGRYRFSSSVRSASSATAAADLKPLLPPFDYEPKPYNGPLTDEIFQKRKKFLGPSLFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLAAVNEQNKLLQHATTIYLHHAIADFAEALAAKMPGNLKVVYFVNSGTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNTWKYPIPQGEIHHVVNPDPYRGVFGSDASSYVKDIQDHIDYGTSGRVAGFIAETIQGVGGAVELAPGYLKHVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASTMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQEHCADVGSHLLKRLRSLQEKYEIIGDVRGRGLMVGVELVTDRKDKTPAKTETAVLFEKLRELGILVGKGGLHGNVFRIKPPMCFTKDDAVCILEMKFLKERCLTLVLLSKCADFLVDALDYAMLKL 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4036169 4043709 + CmaCh04G007920.1 Cma04g00792 291873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00792 1162 SUPERFAMILY L domain-like 29 200 - -
Cma04g00792 1162 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 950 988 IPR005814 GO:0008483|GO:0030170
Cma04g00792 1162 SUPERFAMILY PLP-dependent transferases 735 1129 IPR015424 -
Cma04g00792 1162 CDD OAT_like 726 1125 IPR005814 GO:0008483|GO:0030170
Cma04g00792 1162 Gene3D Aspartate Aminotransferase, domain 1 741 1129 IPR015422 GO:0003824
Cma04g00792 1162 SUPERFAMILY Protein kinase-like (PK-like) 292 586 IPR011009 -
Cma04g00792 1162 Gene3D - 776 1033 IPR015421 GO:0003824
Cma04g00792 1162 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Cma04g00792 1162 Pfam Protein kinase domain 312 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00792 1162 Gene3D Ribonuclease Inhibitor 26 220 IPR032675 -
Cma04g00792 1162 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cma04g00792 1162 ProSiteProfiles Protein kinase domain profile. 311 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00792 1162 Gene3D Transferase(Phosphotransferase) domain 1 388 605 - -
Cma04g00792 1162 PANTHER - 7 633 - -
Cma04g00792 1162 Gene3D Phosphorylase Kinase; domain 1 280 387 - -
Cma04g00792 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Cma04g00792 1162 Pfam Aminotransferase class-III 741 1130 IPR005814 GO:0008483|GO:0030170
Cma04g00792 1162 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 633 - -
Cma04g00792 1162 SMART serkin_6 311 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00308 Cma-Chr3:3952353 Cma04g00792 Cma-Chr4:4036169 0 dispersed
Cma04g00792 Cma-Chr4:4036169 Cma16g00247 Cma-Chr16:1147203 0 dispersed
Cma16g00704 Cma-Chr16:3666493 Cma04g00792 Cma-Chr4:4036169 0 dispersed
Cma17g00883 Cma-Chr17:6737037 Cma04g00792 Cma-Chr4:4036169 8.89E-48 dispersed
Cma09g01190 Cma-Chr9:7646946 Cma04g00792 Cma-Chr4:4036169 0 transposed
Cma16g00669 Cma-Chr16:3489186 Cma04g00792 Cma-Chr4:4036169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68480 PF00202 Aminotran_3 3.90E-84 CL0061 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00792 K13418 - rcu:8287891 950.658