Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00793 ATGCGTCCGATTGGGTTCGATCCCGAAACAGGGAAATCGAGGAGTTATGCTATTTTTATTTACAGAACAAATGAAGGTGCGAGGAGGGCTCTTGAGGAGCCACACAAAGTATTCGAAGGGAACAAATTGCATTGCCAGAGGGCGGCTGAGGGGAAGAACAAGAATCAGAATTCAACGCAGGCAGTGCAAAGCTTGGCGCAGACTCAGCCGCCGATGATGGCGGCCATGGCTACAGCTTCAAATTTGCCATTGTTTGCTCAACATCCGAGCCTCAATCCTGTGTGCGGTGGATTTGGGAACACAGCTTTGGGAGTTGGAATGTTGAACCAGGGAGTAGTTCCCATGAGTCAAGTGGGTCTGGTTGGTAGTTCAGTTGGGGCTGGGATAGGCTTGAGTGGTTACAGTGGGGGTTCATATGGCTTAAGCCAATTAAGTGCCGGTGGTTCGTCAATGCTAGGCTCTTACGGGTCCGATTCTTCATCACTGAAGGGGTTGACGCACATTTACTCGAGCACAATGCTTGGCAAGGCCGTATCGGACCGGGGTCCGGCGGCTTCTGGTGGGTCTCTCGGAGGATACACATCATATTTATGGCTTTTCTTGTTGGCATGCAACAAAGGAGCAGATATTCGCTTAAAAACTGATTTCATGGCAGTTGAGGCTGTGAACATTTTATGTTCTTGTGATGCTGGTGAATTAGTAGTGGAGGATGTTTCATTTGGTTTAGTAGCTTCACTGCTTCTTCGCCTTCATCCTCATTCGCACTTTCATCATTTTTGCGTCTACTTCCATTCTCCTGTTCTTGTTTCCCAAGTTTTCATCGAATTGCTTCTTACAATTGACTGTTGTACAGAAGAAAGCAAGCTGGTGGTGATGATGGACGGAGCAGAACGAGATAGAATGGGATTGTACGAACCTGTCAACAAGCTTGAAATGTGGGGGAACACTTTTAGAAGCAATGCCAATTTAAATGTACCATCATCAACTTTCATTATGGAAGCTGATACCAAACTCGAGAATCAGTCCGATGATGCTTCACTTGGCTCGTTGGGAGATCCTCACATTTATGATCAAGAAGATACTAAACGTATTGATAAGATTCAAAGACGGCTCGCCCAAAATCGGGAAGCTGCCCGCAAAAGTCGCATACGAAAGAAGGCCTATATTAAGCAACTGGAAACGAGCCGTTTGAGACTTATTCGATTAGAGCAAGAGCTTGAAAAAGCAAGGCAACAAGATCTGTTTGCTGGATCTCGATTTGATCATTATCAGATGGGCTTATCTGGAACCACAAATTCAGTCATCTCTGCATTTGAATCAGAGTACGAGCAATGGGTAGAAGAGCAGAACAAGCAGATTTGTGATCTAAGGAATGTTGTGCATGCTGATATCACTGATATTGAGCTTCGAATACTTGTAGAAAACGCAATGAGACACTACTTCAAATTTTTTCACATGAAAGCCAAAGCTGCAAAAACCGATGTTTTTTACATTATGTCAGGCATGTGGAAAACTTCAGCCGAAAGACTTTTCTTATGGATAGGAGGAATTCGCCCTTCAGAACTTCTCAAGGTCTTGATACCAAAACTGGAGACACTGACCGATCAACAAATTTCGGAAACTAGTAGCCTTGGGAAATCATGTCTACAAGCAGAAGATGCTTTAAGACAAGGTATGGAAAAACTACAACAAAACCTATTTGAGAGCATAGTGGCTAGTCAGCTCGATGAAGGAAGTTATCCCCTACAGATGACCGCTGCAATCGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGTAACATTTAATCTCAAGTTCATGAACCGTGTTATTTTAACACTCTCTTTGGTCATCTTAACCTTCCATGGCCCAAGTCCAAGCCCTGGTGATATCCACCTCTTAATGTCTCCTAAAGTTGGCCTTAGGGCAGCTTTGGCTTCCTAG 1947 44.22 MRPIGFDPETGKSRSYAIFIYRTNEGARRALEEPHKVFEGNKLHCQRAAEGKNKNQNSTQAVQSLAQTQPPMMAAMATASNLPLFAQHPSLNPVCGGFGNTALGVGMLNQGVVPMSQVGLVGSSVGAGIGLSGYSGGSYGLSQLSAGGSSMLGSYGSDSSSLKGLTHIYSSTMLGKAVSDRGPAASGGSLGGYTSYLWLFLLACNKGADIRLKTDFMAVEAVNILCSCDAGELVVEDVSFGLVASLLLRLHPHSHFHHFCVYFHSPVLVSQVFIELLLTIDCCTEESKLVVMMDGAERDRMGLYEPVNKLEMWGNTFRSNANLNVPSSTFIMEADTKLENQSDDASLGSLGDPHIYDQEDTKRIDKIQRRLAQNREAARKSRIRKKAYIKQLETSRLRLIRLEQELEKARQQDLFAGSRFDHYQMGLSGTTNSVISAFESEYEQWVEEQNKQICDLRNVVHADITDIELRILVENAMRHYFKFFHMKAKAAKTDVFYIMSGMWKTSAERLFLWIGGIRPSELLKVLIPKLETLTDQQISETSSLGKSCLQAEDALRQGMEKLQQNLFESIVASQLDEGSYPLQMTAAIERLEALISFVNQVTFNLKFMNRVILTLSLVILTFHGPSPSPGDIHLLMSPKVGLRAALAS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4044330 4057454 - CmaCh04G007930.1 Cma04g00793 291874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00793 648 Gene3D - 365 415 - -
Cma04g00793 648 PANTHER TRANSCRIPTION FACTOR TGA9 298 602 - -
Cma04g00793 648 SUPERFAMILY RNA-binding domain, RBD 6 99 IPR035979 GO:0003676
Cma04g00793 648 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 364 408 IPR004827 GO:0003700|GO:0006355
Cma04g00793 648 Coils Coil 385 412 - -
Cma04g00793 648 Pfam Basic region leucine zipper 368 407 IPR004827 GO:0003700|GO:0006355
Cma04g00793 648 PANTHER TRANSCRIPTION FACTOR TGA1 298 602 - -
Cma04g00793 648 SUPERFAMILY Leucine zipper domain 367 406 IPR046347 GO:0003700|GO:0006355
Cma04g00793 648 ProSiteProfiles DOG1 domain profile. 435 648 IPR025422 GO:0006351|GO:0043565
Cma04g00793 648 SMART brlzneu 362 429 IPR004827 GO:0003700|GO:0006355
Cma04g00793 648 Pfam Seed dormancy control 452 527 IPR025422 GO:0006351|GO:0043565
Cma04g00793 648 Gene3D - 3 74 IPR012677 -
Cma04g00793 648 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 369 384 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00793 Cma-Chr4:4044330 Cma04g03005 Cma-Chr4:19651845 1.11E-88 dispersed
Cma16g00671 Cma-Chr16:3506020 Cma04g00793 Cma-Chr4:4044330 8.93E-105 transposed
Cma16g00670 Cma-Chr16:3493420 Cma04g00793 Cma-Chr4:4044330 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34809 PF14144 DOG1 9.90E-27 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00793 K14431 - csv:116401613 497.278