Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00807 ATGAATCGATTTCAAGAAAAAGAGCAAAAAAAAGCAAAAACCCTCGAGAAAACAGAGCAACCCCTGTTCAACAAACAACGCAATAACGCCCACGAAATCAAGAACCCACACCAGAGAAAGCGTGTTGGCAAAGAAAGGACAAGACCCAGAAAAGGGAATGGGCGTGAGAAGGCGAAGCTCACTTCACATTACATACAGACTAACTTCGCCATTTTCACAGTGATGGAGCTCTGCACTGCTGCTATTAAAACCCCCCTTTTCTGCAGACAGATGATGGTGGAGTTCCATGGAGAAATCCCAGAAGACTCTCACGATGGAGACGAAGAACAGGAAGAGGAAATTAGCTACGATGATCTTAAGAAACGAATGTGGAAAGACAGACAGAGGTTGAAAAAGATGAAGGAGAATCGTGATCATGAAGAGTTTGAATGGGCGGCCAGAGAAGAAGCTTCTCGCCGGAAGAAAATGTCCAGAGCTCAAGATTCGATTCTCAAGTACATGGATAAGATAATGGATTCTTGTAAGGCACAAGGGTTTGTTTATGGGATCGTGCCGGAAAAGGGTAAACCGATCACCGGCTCTTCCGAGAGCCTCCGTGAGTGGTGGCAGGACAAGGTTCGGTTCGAACAGAATGCTCCACTGAACATCGCGAATCTCCTTCCGAGAGTGATCGAAGAAGCGGGGCTTGATACCAAATCGTTTCTGCACCTACTCCAAGAATTGCAGGACACAACTTTAGGGTCGATTCTGTCGGCTCTGATGCAGCACTGTATTCCGCCGCAGAGGAAATTCCCGTTGGACAAGGGTCTGGCGCCGCCGTGGTGGCCGACGGGGAAGGAGCTTTGGTGGGGCGAACAAGGCGTCGCCGGTGGGCAGGGCGTTCCACCATATAAAAAGCCTCATGATCTCAAGAAGTCCTGGAAAATCAGTGTCCTTGCGGCGGTGATTAAACACATGTCTCTTGATTTGGGCAACATGAGGAAATTGGTTCGACAATCGAAGAATTTACAGGCGAAAATGACGGCGAAAGAGACGATTACTTGGACTAAGGTCGTGAATCAAGAAGAAGCTCTCTTGCAATTGACCAAAAACAGCCTCAAAATAACATCAGACGAAGAAGATCAAGAACAATACCACCAAAACAGAGGACACGAAAACAGGGCAGAACAAGGCACCGGCGGGATTGTTACGAAACGGAAGTGCGAATTCGAACGAGAAGCCACTGCTGATTCAGCGGTGTACGCTTGCCAGAACGAATGGTGCCCACAAAGCGAGGCGCCAAAGGGGTTCGCCGACAAGAACGCGAGAACAGAGCACGAGACGCAGTGCGTTTACAGAGCCGACGGCGTGGGGCAATTTTCTAACGAACAGTCGATCGACACGCATTTGATGAGCGTGGTGGAGTGGATGAACTGGGAGCTGTCGAGGGCAGAGCCGAGCAGCGGCGAGTCGAGGATTGACGACGGCGGATATGGGTCGGGTAGCAGCACAGTGGATGGCAGTGGGTATTGGAAGGGCGGCATCGGAGAGGTAGGGGTGGATAGCAGCACGGTGGAGGATTATGGCAGTGGGTATTGGAAGGGCAGCATTGGAGAGGCAGCGGTGGATGGGTCGGGTTGCAGCACGGTGGAGGATTATGGGAGTGGGTTTTGGAAGGGCGGCATCGGAGAGGCAGCAGTGGACGAGGCGTTTGAGATGCATAGAGAGAGTATGGATTTGAATGCGAGTCCGGCGGACGATTTGCAATGCCAACAAGATGCAACTTCGATTTGGGATTTGAGATATGAATGGAGTGAAGAATAA 1803 50.53 MNRFQEKEQKKAKTLEKTEQPLFNKQRNNAHEIKNPHQRKRVGKERTRPRKGNGREKAKLTSHYIQTNFAIFTVMELCTAAIKTPLFCRQMMVEFHGEIPEDSHDGDEEQEEEISYDDLKKRMWKDRQRLKKMKENRDHEEFEWAAREEASRRKKMSRAQDSILKYMDKIMDSCKAQGFVYGIVPEKGKPITGSSESLREWWQDKVRFEQNAPLNIANLLPRVIEEAGLDTKSFLHLLQELQDTTLGSILSALMQHCIPPQRKFPLDKGLAPPWWPTGKELWWGEQGVAGGQGVPPYKKPHDLKKSWKISVLAAVIKHMSLDLGNMRKLVRQSKNLQAKMTAKETITWTKVVNQEEALLQLTKNSLKITSDEEDQEQYHQNRGHENRAEQGTGGIVTKRKCEFEREATADSAVYACQNEWCPQSEAPKGFADKNARTEHETQCVYRADGVGQFSNEQSIDTHLMSVVEWMNWELSRAEPSSGESRIDDGGYGSGSSTVDGSGYWKGGIGEVGVDSSTVEDYGSGYWKGSIGEAAVDGSGCSTVEDYGSGFWKGGIGEAAVDEAFEMHRESMDLNASPADDLQCQQDATSIWDLRYEWSEE 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4140179 4144579 - CmaCh04G008070.1 Cma04g00807 291888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00807 600 Pfam Ethylene insensitive 3 117 356 IPR006957 GO:0005634
Cma04g00807 600 MobiDBLite consensus disorder prediction 370 386 - -
Cma04g00807 600 Gene3D - 228 366 IPR023278 GO:0003700|GO:0005634
Cma04g00807 600 Gene3D - 145 223 IPR023278 GO:0003700|GO:0005634
Cma04g00807 600 MobiDBLite consensus disorder prediction 1 20 - -
Cma04g00807 600 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 103 596 - -
Cma04g00807 600 Coils Coil 116 136 - -
Cma04g00807 600 MobiDBLite consensus disorder prediction 1 59 - -
Cma04g00807 600 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 103 596 IPR006957 GO:0005634
Cma04g00807 600 MobiDBLite consensus disorder prediction 370 389 - -
Cma04g00807 600 SUPERFAMILY DNA-binding domain of EIN3-like 235 359 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00807 Cma-Chr4:4140179 Cma10g00973 Cma-Chr10:5025672 2.31E-108 dispersed
Cma16g00693 Cma-Chr16:3614514 Cma04g00807 Cma-Chr4:4140179 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34810 PF04873 EIN3 1.20E-105 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00807 K14514 - csv:116406094 664.07