Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00807 ATGAATCGATTTCAAGAAAAAGAGCAAAAAAAAGCAAAAACCCTCGAGAAAACAGAGCAACCCCTGTTCAACAAACAACGCAATAACGCCCACGAAATCAAGAACCCACACCAGAGAAAGCGTGTTGGCAAAGAAAGGACAAGACCCAGAAAAGGGAATGGGCGTGAGAAGGCGAAGCTCACTTCACATTACATACAGACTAACTTCGCCATTTTCACAGTGATGGAGCTCTGCACTGCTGCTATTAAAACCCCCCTTTTCTGCAGACAGATGATGGTGGAGTTCCATGGAGAAATCCCAGAAGACTCTCACGATGGAGACGAAGAACAGGAAGAGGAAATTAGCTACGATGATCTTAAGAAACGAATGTGGAAAGACAGACAGAGGTTGAAAAAGATGAAGGAGAATCGTGATCATGAAGAGTTTGAATGGGCGGCCAGAGAAGAAGCTTCTCGCCGGAAGAAAATGTCCAGAGCTCAAGATTCGATTCTCAAGTACATGGATAAGATAATGGATTCTTGTAAGGCACAAGGGTTTGTTTATGGGATCGTGCCGGAAAAGGGTAAACCGATCACCGGCTCTTCCGAGAGCCTCCGTGAGTGGTGGCAGGACAAGGTTCGGTTCGAACAGAATGCTCCACTGAACATCGCGAATCTCCTTCCGAGAGTGATCGAAGAAGCGGGGCTTGATACCAAATCGTTTCTGCACCTACTCCAAGAATTGCAGGACACAACTTTAGGGTCGATTCTGTCGGCTCTGATGCAGCACTGTATTCCGCCGCAGAGGAAATTCCCGTTGGACAAGGGTCTGGCGCCGCCGTGGTGGCCGACGGGGAAGGAGCTTTGGTGGGGCGAACAAGGCGTCGCCGGTGGGCAGGGCGTTCCACCATATAAAAAGCCTCATGATCTCAAGAAGTCCTGGAAAATCAGTGTCCTTGCGGCGGTGATTAAACACATGTCTCTTGATTTGGGCAACATGAGGAAATTGGTTCGACAATCGAAGAATTTACAGGCGAAAATGACGGCGAAAGAGACGATTACTTGGACTAAGGTCGTGAATCAAGAAGAAGCTCTCTTGCAATTGACCAAAAACAGCCTCAAAATAACATCAGACGAAGAAGATCAAGAACAATACCACCAAAACAGAGGACACGAAAACAGGGCAGAACAAGGCACCGGCGGGATTGTTACGAAACGGAAGTGCGAATTCGAACGAGAAGCCACTGCTGATTCAGCGGTGTACGCTTGCCAGAACGAATGGTGCCCACAAAGCGAGGCGCCAAAGGGGTTCGCCGACAAGAACGCGAGAACAGAGCACGAGACGCAGTGCGTTTACAGAGCCGACGGCGTGGGGCAATTTTCTAACGAACAGTCGATCGACACGCATTTGATGAGCGTGGTGGAGTGGATGAACTGGGAGCTGTCGAGGGCAGAGCCGAGCAGCGGCGAGTCGAGGATTGACGACGGCGGATATGGGTCGGGTAGCAGCACAGTGGATGGCAGTGGGTATTGGAAGGGCGGCATCGGAGAGGTAGGGGTGGATAGCAGCACGGTGGAGGATTATGGCAGTGGGTATTGGAAGGGCAGCATTGGAGAGGCAGCGGTGGATGGGTCGGGTTGCAGCACGGTGGAGGATTATGGGAGTGGGTTTTGGAAGGGCGGCATCGGAGAGGCAGCAGTGGACGAGGCGTTTGAGATGCATAGAGAGAGTATGGATTTGAATGCGAGTCCGGCGGACGATTTGCAATGCCAACAAGATGCAACTTCGATTTGGGATTTGAGATATGAATGGAGTGAAGAATAA 1803 50.53 MNRFQEKEQKKAKTLEKTEQPLFNKQRNNAHEIKNPHQRKRVGKERTRPRKGNGREKAKLTSHYIQTNFAIFTVMELCTAAIKTPLFCRQMMVEFHGEIPEDSHDGDEEQEEEISYDDLKKRMWKDRQRLKKMKENRDHEEFEWAAREEASRRKKMSRAQDSILKYMDKIMDSCKAQGFVYGIVPEKGKPITGSSESLREWWQDKVRFEQNAPLNIANLLPRVIEEAGLDTKSFLHLLQELQDTTLGSILSALMQHCIPPQRKFPLDKGLAPPWWPTGKELWWGEQGVAGGQGVPPYKKPHDLKKSWKISVLAAVIKHMSLDLGNMRKLVRQSKNLQAKMTAKETITWTKVVNQEEALLQLTKNSLKITSDEEDQEQYHQNRGHENRAEQGTGGIVTKRKCEFEREATADSAVYACQNEWCPQSEAPKGFADKNARTEHETQCVYRADGVGQFSNEQSIDTHLMSVVEWMNWELSRAEPSSGESRIDDGGYGSGSSTVDGSGYWKGGIGEVGVDSSTVEDYGSGYWKGSIGEAAVDGSGCSTVEDYGSGFWKGGIGEAAVDEAFEMHRESMDLNASPADDLQCQQDATSIWDLRYEWSEE 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4140179 4144579 - CmaCh04G008070.1 Cma04g00807 291888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00807 600 Pfam Ethylene insensitive 3 117 356 IPR006957 GO:0005634
Cma04g00807 600 MobiDBLite consensus disorder prediction 370 386 - -
Cma04g00807 600 Gene3D - 228 366 IPR023278 GO:0003700|GO:0005634
Cma04g00807 600 Gene3D - 145 223 IPR023278 GO:0003700|GO:0005634
Cma04g00807 600 MobiDBLite consensus disorder prediction 1 20 - -
Cma04g00807 600 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 103 596 - -
Cma04g00807 600 Coils Coil 116 136 - -
Cma04g00807 600 MobiDBLite consensus disorder prediction 1 59 - -
Cma04g00807 600 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 103 596 IPR006957 GO:0005634
Cma04g00807 600 MobiDBLite consensus disorder prediction 370 389 - -
Cma04g00807 600 SUPERFAMILY DNA-binding domain of EIN3-like 235 359 IPR023278 GO:0003700|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00807 K14514 EIN3; ethylene-insensitive protein 3 - csv:116406094 664.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00807 Cma-Chr4:4140179 Cma10g00973 Cma-Chr10:5025672 2.31E-108 dispersed
Cma16g00693 Cma-Chr16:3614514 Cma04g00807 Cma-Chr4:4140179 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00814 . 2 602 EIL Transcription Factor Family AT2G27050 61.6 8.0e-198 687.6
Cma10g00973 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 8.0e-190 661.0
Cma04g02492 . 7 523 EIL Transcription Factor Family AT2G27050 58.3 1.1e-159 560.8
Cma15g00551 . 1 508 EIL Transcription Factor Family AT2G27050 59.5 4.3e-159 558.9
Cma11g00834 . 66 366 EIL Transcription Factor Family AT2G27050 57.8 1.1e-90 331.6
Cma11g00834 . 73 327 EIL Transcription Factor Family AT5G21120 51.9 2.4e-73 273.9
Cma11g00834 . 58 573 EIL Transcription Factor Family AT1G73730 54.2 4.0e-138 489.2
Cma11g00814 . 36 334 EIL Transcription Factor Family AT1G73730 62.9 4.4e-105 379.4
Cma10g00973 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 8.3e-104 375.2
Cma04g02492 . 39 334 EIL Transcription Factor Family AT1G73730 60.4 9.5e-100 361.7
Cma15g00551 . 40 335 EIL Transcription Factor Family AT1G73730 59.7 2.3e-98 357.1
Cma16g00693 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 5.6e-76 282.7
Cma04g00807 . 111 360 EIL Transcription Factor Family AT1G73730 54.5 1.8e-74 277.7
Cma10g00973 . 3 619 EIL Transcription Factor Family AT3G20770 62.5 1.6e-207 719.9
Cma11g00814 . 3 602 EIL Transcription Factor Family AT3G20770 61.5 2.0e-207 719.5
Cma04g02492 . 6 609 EIL Transcription Factor Family AT3G20770 51.5 1.1e-163 574.3
Cma15g00551 . 7 512 EIL Transcription Factor Family AT3G20770 59.0 3.0e-158 556.2
Cma11g00834 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 6.3e-92 335.9
Cma11g00834 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.1e-70 264.2
Cma16g00693 . 19 356 EIL Transcription Factor Family AT5G10120 57.3 4.1e-104 375.9
Cma04g00807 . 108 445 EIL Transcription Factor Family AT5G10120 58.2 3.5e-103 372.9
Cma11g00834 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 5.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34810 PF04873 EIN3 1.20E-105 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00807 Cma_Chr04 FPKM 0.662577 1.178072 0.0 0.0 0.637322 0.461104 0.902698 0.318203 0.327482 0.276821