Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00817 ATGCACCTTCTAAATTTCTCATCTGCTCCTTCCCCACAGAATTCGAAGTTCAACCTGAAGGTCAACTTGAGAACTCTAGGGAGAAGTGTTGACTACCATGGACTTCAAACGCTTTCCTATAGATATAGCAATGACTCGATTAATCTTTTTTGCTTGGATTTCATGACGTTGCCCATGAAAATGATGTTAGTGAAGATGGGAAAACTCTATCTTACAGCTCTAGTTCTGGCCCTCTTTCATTATATTGCACTGTCTGATTTTCAAGGTCAGGCACTCATTGAATTAAAGAAAGCATTGAATGTAACAGAGAGTCAGCTCACAAGTTGGAACGTAGATCATATCAATCCATGCAGTAGTTGGTCCAATATTATATGTACCGGAAACAATGTGACTAAGATATTATTGTCAACAATGGGATTGACTGGAACCCTGTCTCCGAGTATTGCTGTTCTAAAATCTCTTTCAACTCTGAACTTGAAGGGAAATTACATAACTGGAGAGATACCAGAGGATTTTGGAAACCTGACAAATTTGATCACCTTGGACCTGGAAAATAACAGCCTAACTGGTCGAATACCATCGTCCTTTGGTAATCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCATCTAGCTGGGACTATTCCTGAATCATTTTCGACCCTTCCTAGCTTGATCAATCTTTTTCTTGATTCAAATAATCTCAATGGCCAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAATTTTTCGGGAAATAGGTTGAATTGTGGCAAAAAATTTCACCGTTCCTGTGCTTCAGAAAGTTTCCACATCATGTCAGGTGCTTCCAGTAAGTCAAAGGTTGGCCTTATAGCTGGACTTATTGCTGGGTTAATGCTTGCTCTTCTTTTGGTCGGAGTATTGTTTTTCTTGTGCAAGTATATATATAAAGGCAACAAGGGCGAAGTCTTTGTAGATGTTCCAGGTGAAATTGATCGAAGAATTACATTTGGTCAGCTGAAAAGATTTCCATGGAGGGAATTGCAGCTAGCTACAGAAGACTTTAGTGACAAAAATGTTATAGGACAAGGAGGCTTTGGAAGGGTTTACAAAGGGGTGCTTACTGATGGCACCAAGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCCTTGGGGGAGATGCTGCTTTTCTACAGGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTATTGCGGCTGATTGGGTTCTGTACAACTGAGACCGAACGCTTATTGGTATATCCCTATATGCAGAACTTGAGTGTTGCCTACCATCTTCGAGAAATTAAGCCTGGGGAACGTATTCTAGATTGGCCTACTCGAAAACGTGTGGCATTGGGTGCAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATTCACCGAGATGTTAAGGCTGCTAATGTATTGCTTGATGATGATTTTGAAGCTGTAGTGTGCGATTTTGGCCTAGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACGACTCAAGTTCGGGGGACAGCTGGCCACATAGCACCGGAGTACTTATCCACCGGAAAATCATCAGAAAAGACTGATGTTTTTGGCTATGGCATTATGCTTTTAGAACTTGTTACAGGGAAAAGAGCAATGGACTTATCACGCTTGGAAGGAGATGATGTTTTACTGCTCGACCATGTCAAAAAATTGGTAAGGGAGAAGCGACTCACTGCTATTGTCGACGAAAACCTGAATAACTATGATATTAGAGAGGTGGAAATGATGACCCAAGTCGCGCTACTGTGCACACAGCAATCTTCGGTTGACCGACCGACAATGTCACAGGTCACTCGGATGCTGGAAGGCGAGGGGCTAGCAGAGAGGTGGGAAGAATGGCAGCATTTAGAGGTGACTCGCAAACAAGACTTTGAGAGAATACTGAGAAGATTTGCGTTGGGGGATGATTCCATATATAAACAGGAACCTATCCAGTTGTCTGGTGGAAGATGA 2019 41.41 MHLLNFSSAPSPQNSKFNLKVNLRTLGRSVDYHGLQTLSYRYSNDSINLFCLDFMTLPMKMMLVKMGKLYLTALVLALFHYIALSDFQGQALIELKKALNVTESQLTSWNVDHINPCSSWSNIICTGNNVTKILLSTMGLTGTLSPSIAVLKSLSTLNLKGNYITGEIPEDFGNLTNLITLDLENNSLTGRIPSSFGNLKKLQFLTLSQNHLAGTIPESFSTLPSLINLFLDSNNLNGQIPEQLFQVSKFNFSGNRLNCGKKFHRSCASESFHIMSGASSKSKVGLIAGLIAGLMLALLLVGVLFFLCKYIYKGNKGEVFVDVPGEIDRRITFGQLKRFPWRELQLATEDFSDKNVIGQGGFGRVYKGVLTDGTKVAVKQSTNYESLGGDAAFLQEVEMISVAVHRNLLRLIGFCTTETERLLVYPYMQNLSVAYHLREIKPGERILDWPTRKRVALGAARGLGYLHEHCNPKIIHRDVKAANVLLDDDFEAVVCDFGLAKLVDVRKTNVTTQVRGTAGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGKRAMDLSRLEGDDVLLLDHVKKLVREKRLTAIVDENLNNYDIREVEMMTQVALLCTQQSSVDRPTMSQVTRMLEGEGLAERWEEWQHLEVTRKQDFERILRRFALGDDSIYKQEPIQLSGGR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4181746 4192202 - CmaCh04G008170.1 Cma04g00817 291898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00817 672 SUPERFAMILY L domain-like 88 259 - -
Cma04g00817 672 Gene3D Transferase(Phosphotransferase) domain 1 428 643 - -
Cma04g00817 672 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Cma04g00817 672 Pfam Leucine rich repeat N-terminal domain 88 125 IPR013210 -
Cma04g00817 672 Pfam Protein kinase domain 352 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00817 672 Gene3D Ribonuclease Inhibitor 85 269 IPR032675 -
Cma04g00817 672 SMART LRR_typ_2 175 198 IPR003591 -
Cma04g00817 672 SMART LRR_typ_2 223 247 IPR003591 -
Cma04g00817 672 SMART LRR_typ_2 199 222 IPR003591 -
Cma04g00817 672 SMART LRR_typ_2 151 174 IPR003591 -
Cma04g00817 672 SUPERFAMILY Protein kinase-like (PK-like) 330 624 IPR011009 -
Cma04g00817 672 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 71 672 - -
Cma04g00817 672 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Cma04g00817 672 ProSiteProfiles Protein kinase domain profile. 351 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00817 672 SMART serkin_6 351 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00817 672 PANTHER LRR RECEPTOR KINASE SERK2 71 672 - -
Cma04g00817 672 Gene3D Phosphorylase Kinase; domain 1 320 427 - -
Cma04g00817 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00817 Cma-Chr4:4181746 Cma09g01190 Cma-Chr9:7646946 0 dispersed
Cma04g00817 Cma-Chr4:4181746 Cma04g00818 Cma-Chr4:4193486 0 tandem
Cma16g00704 Cma-Chr16:3666493 Cma04g00817 Cma-Chr4:4181746 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68481 PF00069 Pkinase 1.60E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00817 - - cmax:111479289 1214.91