Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00818 ATGAAAATGATGCTAGTTAGGATGGGAGAGCTCTATCTTACAATTCTACTACTGGCTTGCTTTCATAATTTTGCGCTGTCTGATTATCAAGGTGATGCTCTCTTTTCATTGAGACGCGCATTGAATGCAACAGAAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGACCAGTGTTATATGTAATGGAAACAATGTGATCTCTGTATCCTTGTCAGCTATGGGCTTTACTGGAACTTTGTCCCCGAAAATTGGAGTTCTCCAATCACTTTCAACGCTGATTTTGCAGGGGAATCACATAACTGGAGAGATACCAAAGGATTTTGGAAACTTGACAAATTTGGTCAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCATATACCATCGTCCCTGGGTAATCTTCAGAAACTACAGTTCCTAACTCTGAGTCATAATCGTCTAACTGGGACTATCCCTGAGTCGCTCTCAAGCATTCCTAGCTTGATTAGTCTGCTTCTTGACTCAAATGATCTCACGGGCCCAATTCCGGAGCAGTTATTTCAAGCTTCAAAATTCAACTTTTCTGGAAACAAGTTAGATTGTAGCGGGAAGTTTCTGCATGCCTGTGCTTCAGACAGTTCAAACTCAGGTTCTTCGAATAAACCTAAGGTTGGCCTTATTGTTGGAATTATAGCTGGGTTTACTGTTGCTCTCCTTTTGGTCGGTGTATTATTTTTCTTGTGCAAGGGTAGATATAAAGGCTACAAGCGCGAAGAGTTCGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTTTATGGAGAGAACTGCAGCATGCTACAGACAACTTTAGTGAGAAAAATGTTCTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGTTTGCCGATGGCACCAAAGTTGCAGTGAAACGGTTGACTGATTATGAAAGTCCAGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGCGTAGCTGTTCATAGAAATCTGTTGCGGCTGATTGGGTTCTGTACGACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAATTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCTGGGGAGGCTGCTTTAGATTGGCCTACTCGAAAACGTGTGGCATTGGGCACTGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAATCCAAAGATTATTCATCGAGATGTTAAGGCAGCCAATGTATTACTTGATGAAGATTTTGAAGCAGTTGTTGGTGATTTTGGCTTAGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACTACTCAAGTTCGAGGGACAATGGGCCACATAGCACCGGAGTACTTATCAACTGGAAAATCATCAGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTTACAGGGCAGCGCGCGATCGACTTCTCACGCTTAGAAGAAGAAGACGATGTTTTACTACTCGACCATGTTAAGAAACTAGAAAGAGAAAAACGACTCAATGCTATCGTAGATCGGAATCTAAGTAACTACAATATTCAAGAGGTGGAGATGATGATCCAAGTTGCACTGCTGTGCACACAGCCGTGTTCGGATGACCGTCCAGCAATGTCGCAAGTCGTTCGAATGCTCGAAGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTTACTCGCAGACAGGAGTATGAGAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCAATTCATAGACAGGATGCAATCGAATTGTCTGGTGGAAGATGA 1839 42.9 MKMMLVRMGELYLTILLLACFHNFALSDYQGDALFSLRRALNATENQLTDWNPNQVNPCTWTSVICNGNNVISVSLSAMGFTGTLSPKIGVLQSLSTLILQGNHITGEIPKDFGNLTNLVSLDLGNNSLTGHIPSSLGNLQKLQFLTLSHNRLTGTIPESLSSIPSLISLLLDSNDLTGPIPEQLFQASKFNFSGNKLDCSGKFLHACASDSSNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLCKGRYKGYKREEFVDVAGEVDRRIAFGQLKRFLWRELQHATDNFSEKNVLGQGGFGKVYKGVFADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAALDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLNAIVDRNLSNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIELSGGR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4193486 4201207 - CmaCh04G008180.1 Cma04g00818 291899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00818 612 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Cma04g00818 612 Gene3D Transferase(Phosphotransferase) domain 1 367 583 - -
Cma04g00818 612 ProSiteProfiles Protein kinase domain profile. 290 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00818 612 SUPERFAMILY L domain-like 30 201 - -
Cma04g00818 612 SUPERFAMILY Protein kinase-like (PK-like) 270 564 IPR011009 -
Cma04g00818 612 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Cma04g00818 612 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Cma04g00818 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Cma04g00818 612 SMART LRR_typ_2 164 188 IPR003591 -
Cma04g00818 612 SMART LRR_typ_2 92 115 IPR003591 -
Cma04g00818 612 SMART LRR_typ_2 140 163 IPR003591 -
Cma04g00818 612 SMART LRR_typ_2 116 139 IPR003591 -
Cma04g00818 612 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 612 - -
Cma04g00818 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 612 - -
Cma04g00818 612 SMART serkin_6 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00818 612 Gene3D Ribonuclease Inhibitor 28 223 IPR032675 -
Cma04g00818 612 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cma04g00818 612 Pfam Protein kinase domain 291 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00818 Cma-Chr4:4193486 Cma16g00704 Cma-Chr16:3666493 0 dispersed
Cma20g01006 Cma-Chr20:6426222 Cma04g00818 Cma-Chr4:4193486 0 dispersed
Cma04g00817 Cma-Chr4:4181746 Cma04g00818 Cma-Chr4:4193486 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68482 PF00069 Pkinase 3.20E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00818 - - csv:116403405 1082.4