Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00846 ATGGGTTTGGATGATGTTTCTCAAACAAGCTTGGTTTTGGGGTTGGGGATCTCAGAAGCTGCTTCTCCAATTATTAACAACTTCAAGAACAACAACAACAACAACCATCCCACTTCACTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCGGGCGATGTTGATCCTCCTCCTCCTCCTCCTCCTCATCATCATCATCCTCATCATCATTTGTATCGCCAAGCTTCCCCTCATAGCAGCGCTGTTTGTTCTTCCTTCTCCGGGGGTGGTGGCGGTGGGATTAAAAGGGAGAGAGACCTCAGCAGTGAAGAAGTTGAATTGGAGAGGGTTTGTTGTAGAGTTAGTGATGAAGATGAAGATGGTTGTAATACTAGGAAGAAGCTTAGGCTTTCTAAACAACAATCCGCGCTATTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCCAAACAAAAGCAAACCTTAGCCAGACACCTAAACCTACGCCCAAGACAAGTGGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAAATGAAACAAACAGAAGTAGACTGTGAGTTCTTGAAGAAATGTTGCGAGACGTTGACAAACGAAAATAGAAGACTACAGAAGGAGCTTCAAGAATTGAAAGCGCTAAAGCTCGCACACCCGCTGTACATGCACATGCCAGCAGCAACGTTAACCATGTGCCCATCCTGCGAAAGGGTGGGTGGCGTTGGCGTTGGCGATGGCGCTTCCAAACCCAAATTTTCAATGGCTCCAAAGCCCCACTTTTACAACCCCTTCTCCAATCCTTCAGCCGCATGTTAG 819 45.67 MGLDDVSQTSLVLGLGISEAASPIINNFKNNNNNNHPTSLDFEPCALTLGFSGDVDPPPPPPPHHHHPHHHLYRQASPHSSAVCSSFSGGGGGGIKRERDLSSEEVELERVCCRVSDEDEDGCNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTKMKQTEVDCEFLKKCCETLTNENRRLQKELQELKALKLAHPLYMHMPAATLTMCPSCERVGGVGVGDGASKPKFSMAPKPHFYNPFSNPSAAC 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4348299 4349795 - CmaCh04G008460.1 Cma04g00846 291927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00846 272 MobiDBLite consensus disorder prediction 51 101 - -
Cma04g00846 272 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Cma04g00846 272 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Cma04g00846 272 Gene3D - 130 180 - -
Cma04g00846 272 PANTHER - 7 272 - -
Cma04g00846 272 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Cma04g00846 272 SMART HOX_1 124 186 IPR001356 GO:0003677
Cma04g00846 272 Coils Coil 188 218 - -
Cma04g00846 272 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Cma04g00846 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 272 - -
Cma04g00846 272 SUPERFAMILY Homeodomain-like 120 183 IPR009057 -
Cma04g00846 272 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Cma04g00846 272 CDD homeodomain 126 180 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00879 Cma-Chr3:6478531 Cma04g00846 Cma-Chr4:4348299 6.24E-96 dispersed
Cma04g00846 Cma-Chr4:4348299 Cma17g00930 Cma-Chr17:6988226 1.60E-74 dispersed
Cma04g00846 Cma-Chr4:4348299 Cma07g00621 Cma-Chr7:2669609 4.85E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34814 PF00046 Homeodomain 6.90E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00846 K09338 - csv:101205848 340.502