Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00851 ATGCCATTTTTGAAGTTTCCACCATCCTCTCTCTTTCTTCTTTTCACTCTCTCCTTCTTCCACTTCTTCGCTGTGGGTCTCTTCTCCAACGTCGACTACGATATTCTGATTAGTGTCAAGAACACCCATCTCGACGATCCCGATGGAGCTTTGAAGGATTGGGTTCCCAATCAAGCTCACACCCCCTGTTCTTGGACTGGCATCACTTGCGATTCCACTAACTTTTCTGTTCTTGCCATCAATTTGACCACTTCCAACATCGCCGGCGGATTTCCCTACGATTTCTGCCGGATTCCCACCCTTCAAAACCTTTCTATCACAGTCACCAACATCAATGGAACTTTACTCTCCCCTTCCTTCTCTCTCTGTTCTCGCCTCCAACTCCTCAATCTTTCCTCTAATCTACTTGTCGGTAGGCTGCCCCAGTTTTCCCCTCTTTTCACACAGCTGCAAATTCTCGATCTCTCCTCCAATAATTTCACCGGCGATGTTCCTCTCAGTTTCGGCCAGTTGCCGGCGCTCAGAGTGCTTCGCTTGACGATGAATTTGCTCGACGGCCCTGTCCCCTCTGTTCTGGGAAATCTCACTCAGCTAACCGAAATGGCCATCGCTTATAATCCCTTCATACCGAGTCCCTTACCGCCCGAGTACGGAAACCTGTCAAAACTCGAAAATATGTTTATAAGCACAGCAAATCTCATCGGACCCATTCCTGGTTCCATCGGAAAACTTGCTATGCTTACCAATCTTGATTTAACTGCCAATTCGATATCTGGCCCTCTCCCGGATTCAATCGGCGGACTCAGGAGCATAGAGAGGATTCAACTCTACAATAACCGAATCTCCGGTGAATTTCCAGAGAGTATCGGTAATTGGACTTCTCTGTCATGTCTCGACCTCTCTCAGAATAGTCTCACCGGAAAGTTACCGGATAAATTTGCTGCGATCCCTCTAGAAACTCTGCATCTCAATGACAATTTCCTGGAAGGGGAGTTTCCGGAGAGTTTAGCTTCGAGCCCACATCTTAAAGATTTGAAACTGTTCAACAATAGCTTTTCTGGAACACTTCCTCAAAATTTGGGTCTCAACTCTCCCTTTGCTGAGGTTGATTTCTCTTCCAACAATTTCGAAGGTAATATTCCGAAATTTCTCTGCCAACGAAACCGCCTTCAGAAATTTATTTTATTCAGCAACAGCTTCTCTGGGAATTTCCCAGAATCGTACGGCGCTTGTGATTCTCTTAAATATGTCAGAATCGAGAACAATCAACTTTCCGGCGAGGTACCGGACTCGTTCTGGAAACTCCCTAATCTTAATAGCATACAAATGTCGGATAATCAATTTCAGGGCTCCATTCCGCCGGCGATAAGCCACGCTCGCGATCTCCAAGTGTTGTTGATTTCCGGTAACAACTTCTCCGGCCAGTTGCCAGCAGAGATTTGCAAATTGAAAGAGCTAGTTCGGTTTGACATCGGCAGGAACAAATTCTCCGGTGGAGTTCCTTCCTGTATAACAGAGTTGCAGAAACTTCAAAAGCTCGACATGCAAGAAAACCAGTTCGCCGGCGAAATTCCCAAGTTGGTTCAGTTCTGGAAAGAACTAACCGAGCTGAATCTGTCCCATAATCAATTTACCGGCAAGATTCCGCCTCAGCTTGGCGATTTACCGGTTCTAACGTACTTGGATCTCTCTGCAAATTTACTCTCCGGCGAAATCCCGGAGGAATTGACAAAGCTGAAACCGGACCAATTCAATTTATCGAACAACAAATTGACCGGAAAAGTTCCATCCGGCCTCGACAACGAACAGTTCGTCGGTAGTTTACTGGGCAATCCGGGTCTCTGTAGCTCGGATTTGAAGCCACTAAACCGGTGTTCGAAACCCAAACCCCCAAGCTTCTATGTTGTGGTGATTCTCTCAGTTCTAGCTTTCGTTCTCATCGGGTCTCTCATTTGGGTAATCAAATTCAAGATGAATCTGTTGGGCAAATCCAAATCTCCATGGACGGTGACCAAGTTCCAAAGGGCCGGGTTCGACGAAGAAGATGTAATTCCTCATCTAACCAAAGGGAATATAATCGGGTCGGGCGGTTCGGGTACAGTATTCAAAGTGAATCTGAAAACAGGTCAGACCGTAGCAGCCAAAAGTCTGTGGAGAGGCCACAACCAATCGGATATTGAATCGGTTTTCCAATCGGAAGTCGAGACGTTGGGTCGGATCCGGCATGCCAATATTGTGAAGTTGATATTCAGTTGCAGCAATGGCGAAGGAAGTAGAATTCTTGTTTACGAGTACATGGAGAATGGAAGCTTAGGAGATGTTCTACACGAGAACAAATCCGAAGCTTTGTCAGATTGGTCGAAAAGATTGAACATCGCCATGGGAGCGGCCCAGGGATTAGCTTATCTGCACCATGACTGCGTCCCTCCAATAATCCATCGCGACGTGAAGAGCAACAACATTCTGTTGGACGCTGAATTTTGCCCTCGAGTGGCTGATTTTGGGCTGGCAAAGACGCTGGAACGCCAGACAGAGGGCAACGATGCTGGTGTCATGTCTCGCATCGCTGGCTCCTACGGCTATATTGCTCCCGAATATGGATATACTATGAAGGTAACAGAGAAGAGTGACGTGTATAGCTTTGGAGTAGTTTTGATGGAGTTAGTGACCGGGAAGCGACCAAACGACCCGAGTTTTGGGGAGAACAGAGATATCGTCAAATGGGTAACGGAGGCTGCTTTATCAGAGGTTGAGGAGAAAGGGTTGAGCTTGGATGAGATAATTGATGAAAAGTTGGATCCAAGAACATGTGAAGTAGAGGAGATAGCTAAGATTTTGGATGTGGCTGTGCTTTGCACCTCTGCTTTGCCCATTGACAGACCTTCCATGAGAAAAGTAGTTGAGATGATAAGAGACACCAAACTCCCTCCTTCTAAGTCATGA 2943 46.55 MPFLKFPPSSLFLLFTLSFFHFFAVGLFSNVDYDILISVKNTHLDDPDGALKDWVPNQAHTPCSWTGITCDSTNFSVLAINLTTSNIAGGFPYDFCRIPTLQNLSITVTNINGTLLSPSFSLCSRLQLLNLSSNLLVGRLPQFSPLFTQLQILDLSSNNFTGDVPLSFGQLPALRVLRLTMNLLDGPVPSVLGNLTQLTEMAIAYNPFIPSPLPPEYGNLSKLENMFISTANLIGPIPGSIGKLAMLTNLDLTANSISGPLPDSIGGLRSIERIQLYNNRISGEFPESIGNWTSLSCLDLSQNSLTGKLPDKFAAIPLETLHLNDNFLEGEFPESLASSPHLKDLKLFNNSFSGTLPQNLGLNSPFAEVDFSSNNFEGNIPKFLCQRNRLQKFILFSNSFSGNFPESYGACDSLKYVRIENNQLSGEVPDSFWKLPNLNSIQMSDNQFQGSIPPAISHARDLQVLLISGNNFSGQLPAEICKLKELVRFDIGRNKFSGGVPSCITELQKLQKLDMQENQFAGEIPKLVQFWKELTELNLSHNQFTGKIPPQLGDLPVLTYLDLSANLLSGEIPEELTKLKPDQFNLSNNKLTGKVPSGLDNEQFVGSLLGNPGLCSSDLKPLNRCSKPKPPSFYVVVILSVLAFVLIGSLIWVIKFKMNLLGKSKSPWTVTKFQRAGFDEEDVIPHLTKGNIIGSGGSGTVFKVNLKTGQTVAAKSLWRGHNQSDIESVFQSEVETLGRIRHANIVKLIFSCSNGEGSRILVYEYMENGSLGDVLHENKSEALSDWSKRLNIAMGAAQGLAYLHHDCVPPIIHRDVKSNNILLDAEFCPRVADFGLAKTLERQTEGNDAGVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDPSFGENRDIVKWVTEAALSEVEEKGLSLDEIIDEKLDPRTCEVEEIAKILDVAVLCTSALPIDRPSMRKVVEMIRDTKLPPSKS 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4368041 4371313 - CmaCh04G008510.1 Cma04g00851 291932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00851 980 SUPERFAMILY L domain-like 176 449 - -
Cma04g00851 980 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524
Cma04g00851 980 Gene3D Phosphorylase Kinase; domain 1 676 765 - -
Cma04g00851 980 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Cma04g00851 980 Gene3D Ribonuclease Inhibitor 316 630 IPR032675 -
Cma04g00851 980 Gene3D Ribonuclease Inhibitor 30 210 IPR032675 -
Cma04g00851 980 ProSiteProfiles Protein kinase domain profile. 687 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00851 980 Pfam Leucine Rich Repeat 534 552 IPR001611 GO:0005515
Cma04g00851 980 Gene3D Ribonuclease Inhibitor 211 315 IPR032675 -
Cma04g00851 980 Gene3D Transferase(Phosphotransferase) domain 1 766 976 - -
Cma04g00851 980 SUPERFAMILY L domain-like 36 230 - -
Cma04g00851 980 SUPERFAMILY L domain-like 368 620 - -
Cma04g00851 980 Pfam Leucine rich repeat 149 207 IPR001611 GO:0005515
Cma04g00851 980 SUPERFAMILY Protein kinase-like (PK-like) 681 970 IPR011009 -
Cma04g00851 980 SMART serkin_6 687 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00851 980 Pfam Protein kinase domain 689 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00851 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Cma04g00851 980 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 975 - -
Cma04g00851 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 10 975 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00851 Cma-Chr4:4368041 Cma11g01798 Cma-Chr11:12031664 0 dispersed
Cma04g00851 Cma-Chr4:4368041 Cma13g00622 Cma-Chr13:5990548 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68483 PF00069 Pkinase 1.30E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00851 - - cmax:111486690 1915.2