Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00857 ATGGCCATTTCCAATCTTGGAGTTCAAACAAACCACCATTTTCATGCACTTCAAGTCTTCATCTTCTCTTTCATTCTCTTCAAGGTTCATTCACTTTCCTTCAACTTCCCCAACTTTCAACCAAACAATCTCGACATATTCTTCGAAGGTGATAGCTCCACCAGCAATGATGTTATTCAACTTACAAAGAACCGAGCCGACGCCTCCCTCACCGAGAGTGCCGGCCGAGCTTCCTACGCCAAGCCGATACGCCTATGGGACGCCTCCACAGGACAGGTTGCGGACTTCACCACCCACTTCTCCTTTAGAATCAACACACTTAACCAAACTGTATTTGGTGATGGCATAGCCTTCTTCATCGTCCCTTACAATTCCACAATCCCACCTAACTCAACAGGGGGTTTTCTTGGATTATTCAGCTCCGACTCTGCTTTTGATACCTCCAAGAATCAAGTTTTTGCTGTTGAATTTGACAGTAAGAAGGATGATTGGGACTCGAAGGAAGATCATATAGGAATCAATATCAATTCCATTAATTCTACTCGTCATCTTAATTGGAACTCCAGCATGAAGGATAACCGATTGGCCAATGCCTGGATAACATACAATTCCTCCACTAAAAATTTGTCTGTGTATCTAACTTATGATCACGATCCGATTTTTACTGGAAATTTTAGCATCTCAGCTTCTGTTGACTTGAAAAGTTTATTGCCTGAAAAGGTCAGAATTGGATTCTCCGCAGCTACGGGGGACTGGTATCAAATACATAACATGATTTCTTGGAACTTCAATTCAACCTTGGACGATAATACTGGAGGTGGAGGTGGAGGTGGAGATAAAAATAAAAATATTGGTTTGGCCATTGGCCTAGGTGTTGGGCTTGGTGTTTTGATATGTGGGTTGGGCTTGTTCGGCTTTGTTTGGCGGAGGAAACAATTGAGAAGCAGAATGGAAGATGTGGAAGATCTTATGGATGATGAGTTTGAAAGAGGAACTGGCCCAAAAAGGTTCACTTATAGGGAATTAACTCAAGCCACAAAGAATTTTGATGAGGTCGGCAAGCTTGGGGAAGGAGGGTTTGGAGGTGTTTACAAGGGTTTGTTAACCGAATCAGATACAGAAATCGCGGTAAAGAGGGTTTCCAGAGGATCAAGACAGGGGAAAAAAGAGTACGTCTCTGAAGTGAAGATTATAAGTCGTTTGAGGCATAGGAATCTTGTTCAGCTCCTCGGTTGGTGCCATGAACGAGGCGATTTCCTTTTGGTTTATGAGTTCATGCCCAATGGCAGCCTGGATACCCACCTCTTCAAAGGTAAAACCATGCTAACTTGGGAGGTTCGATACAAAATAGCTGTAGGTTTGGCTTCTTCTTTGCTATATCTTCACGAAGAATGGGAACAATGTGTGGTGCATAGAGATATCAAGTCCAGCAATGTAATGCTGGACTCGCATTTCAACGCCAAACTCGGGGATTTCGGGCTTGCAAGGTTTGTGGACCATGAGATGGGCTCACAAACTACTGTTCTGGCTGGCACCATGGGGTATCTAGCCCCAGAGTGTGTGACGGATGGCAAGGCCAGTAAAGAATCAGATGTTTACAGTTTTGGTGTGGTTGCTCTTGAGATTGCCTGTGGACGGCGGCCAGTAGAAGCAAGAGCCGAGCCTGATCAAGTGAGGCTTGTGGAGTGGGTGTGGGGGATGTATGGCAGAGGCCAAGTCCTAGAAGCTGCAGACAAGAGACTGGCAATGGACTTCGATGAGCAACAAATGGAGGGTTTGATGGTGGTGGGATTATGGTGCTGCCACCCTGACTTCAAGATGCGTCCCTCCATAAGACAGGTGATTAATGTTCTAAATGTTGAAGCTCCACTGCCCGCCCTGCCTTCAAAGTTACCCGTGCCGATGTACTTTGCACCGCCGTTGGATTTATGCAAGTTTACGTACACATCGACAGGCTCCACCGAGACGCCAGTGGATAGAAGTGAGTGTTCATGTAGTAATTGTTCGAATTACACCACAAAATCATCAGGATCAACTATGGGGTTTGGCCCTTTGGTGCACAGCCATGGCTGCCGCTTTCTTCTTCTTCTTCTTTCCTCTCCACCCCAGTACCAATCGGATTCCGACCACCCCACTAAGGTCGTGATGGATAATGGTATTGTCCAAGTTACTCTGTCCACCCCAGATGGTGACGTGGTTGGATTGAGCTACAATGGAATCGATAACATTCTGGACACCAAAACCGAAGCGCCGAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAAACGAACACATTAACACTGACAGATTACTAGGAACCACGTTTAAAGTGATAGTATCCAACGACGAGCAACTGGAAATCTCGTTTGTCAAAACATGGAGCGTTGCAGTTGGGAACAAGAACGCCCCTGTCAATGTAGACAAAAGGTTCGTGTTGCTGAGAGGAAGCTCTGGGTTTTATACGTATGCCATATTCGAGAGGCTGACCGGGTGGCCGGAGATTGAAATGGATCAAGTTAGGATCGTTTTCAGACCTCAGAAAAAAATGTTTGATTACATGGCTGTATCGGACAGTAGACAGAGAGTGATGCCGACAATGGACGACCGAGATAATGGTGATCCATTGGCGTACCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATGAGAAACTCAGAGGAGAGGTAGATGACAAGTACATGTACTCAATAGAGGACAAGGATAACCTAGTTCACGGCTGGATCTCCAGAAATCCACCGACTGGATTCTGGATGATCACTCCTAGTGACGAGTTCCGCGTCGCCGGTCCGGTCAAGCAGGATCTGACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAACGGATGTGGGCATGAAATTTGCAAAAGGAGAGCCTTGGAAGAAGGTCTTCGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCCCTAAGGAGGATTATCGTTCTCTATGGCAAGATGCCAAACAACAGTTGGCAACGGAAATCAGTAAGTGGCCCTATACGTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGCGTCGCCGGCCGGTTACTAATCCGTGATGGGTCTATTAGCGACAGACTTTTGCGTGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCCTGGCAAAGGGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGACAGTCACGGCAGCTTCTTAATCAATAACGTCCGAGAAGGAGTTTATAATCTTTATGCTTTTGTTCCTGGCTTTATTGGAGACTACAAGTATGAGGGAAATATAACAATCAAGGCTGGGTCTAAAACTAAATTGGATGAGATGGTGTTTGATCCGCCGAGACAGGGCCCAACCATCTGGGAGATCGGCATTCCCGACCGCACAGCAGCGGAGTTTTATGTGCCCGACCCTTTTCCGACTCTCATGAATAAACTATACATTGACCATGATGACAAGTTCAGACAATATGGGTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACTGTTGGTGTGGATAATTATACCCAGGACTGGTTCTATGCTCATGTTACCAGGGATGTGGGGAATCAAACATACGAAGCAACCACATGGGAGATCAGATTTTCATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTGGCATCTGCTGCTGATTGCGAATTACAGGTTCGGTTAAACGATAAAAAGTCGAGCCGACCCGGGTTTACGACAGGAAGGATCGGAAGGGACAACGCAATTGCAAGGCATGGGATTCATGGGCTTTACTGGTTATACTCGGTGCCTTTCCCTGGCACTCAATTTCTGAAAGGGAACAACTCCATGTATTTCACTCAGGCAAGAGGCCAAGGCCCTTTCCAAGGTCTCATGTACGACTACGTTCGACTCGAAGCTCCACCTCGAACATAA 3996 46.55 MAISNLGVQTNHHFHALQVFIFSFILFKVHSLSFNFPNFQPNNLDIFFEGDSSTSNDVIQLTKNRADASLTESAGRASYAKPIRLWDASTGQVADFTTHFSFRINTLNQTVFGDGIAFFIVPYNSTIPPNSTGGFLGLFSSDSAFDTSKNQVFAVEFDSKKDDWDSKEDHIGININSINSTRHLNWNSSMKDNRLANAWITYNSSTKNLSVYLTYDHDPIFTGNFSISASVDLKSLLPEKVRIGFSAATGDWYQIHNMISWNFNSTLDDNTGGGGGGGDKNKNIGLAIGLGVGLGVLICGLGLFGFVWRRKQLRSRMEDVEDLMDDEFERGTGPKRFTYRELTQATKNFDEVGKLGEGGFGGVYKGLLTESDTEIAVKRVSRGSRQGKKEYVSEVKIISRLRHRNLVQLLGWCHERGDFLLVYEFMPNGSLDTHLFKGKTMLTWEVRYKIAVGLASSLLYLHEEWEQCVVHRDIKSSNVMLDSHFNAKLGDFGLARFVDHEMGSQTTVLAGTMGYLAPECVTDGKASKESDVYSFGVVALEIACGRRPVEARAEPDQVRLVEWVWGMYGRGQVLEAADKRLAMDFDEQQMEGLMVVGLWCCHPDFKMRPSIRQVINVLNVEAPLPALPSKLPVPMYFAPPLDLCKFTYTSTGSTETPVDRSECSCSNCSNYTTKSSGSTMGFGPLVHSHGCRFLLLLLSSPPQYQSDSDHPTKVVMDNGIVQVTLSTPDGDVVGLSYNGIDNILDTKTEAPNRGYWDAVWNNPNEHINTDRLLGTTFKVIVSNDEQLEISFVKTWSVAVGNKNAPVNVDKRFVLLRGSSGFYTYAIFERLTGWPEIEMDQVRIVFRPQKKMFDYMAVSDSRQRVMPTMDDRDNGDPLAYPEAVLLTNPANEKLRGEVDDKYMYSIEDKDNLVHGWISRNPPTGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGTDVGMKFAKGEPWKKVFGPVFVYLNSASPKEDYRSLWQDAKQQLATEISKWPYTFPQSEDFPSSAQRGSVAGRLLIRDGSISDRLLRASNAFVGLALPGPVGSWQRESKGYQFWTQADSHGSFLINNVREGVYNLYAFVPGFIGDYKYEGNITIKAGSKTKLDEMVFDPPRQGPTIWEIGIPDRTAAEFYVPDPFPTLMNKLYIDHDDKFRQYGLWERYAAMYPNNDLVFTVGVDNYTQDWFYAHVTRDVGNQTYEATTWEIRFSLQSVNQTANYTLQIALASAADCELQVRLNDKKSSRPGFTTGRIGRDNAIARHGIHGLYWLYSVPFPGTQFLKGNNSMYFTQARGQGPFQGLMYDYVRLEAPPRT 1331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4387318 4395545 + CmaCh04G008570.1 Cma04g00857 291938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00857 1331 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 267 IPR013320 -
Cma04g00857 1331 SMART serkin_6 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00857 1331 ProSiteProfiles Protein kinase domain profile. 349 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00857 1331 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Cma04g00857 1331 Gene3D - 1135 1326 - -
Cma04g00857 1331 CDD STKc_IRAK 363 619 - -
Cma04g00857 1331 CDD RGL4_N 708 992 - -
Cma04g00857 1331 ProSitePatterns Legume lectins alpha-chain signature. 237 246 IPR000985 -
Cma04g00857 1331 Gene3D - 29 273 - -
Cma04g00857 1331 CDD RGL4_M 1028 1124 IPR029413 -
Cma04g00857 1331 SUPERFAMILY Protein kinase-like (PK-like) 333 645 IPR011009 -
Cma04g00857 1331 Gene3D Transferase(Phosphotransferase) domain 1 426 638 - -
Cma04g00857 1331 Pfam Polysaccharide lyase family 4, domain III 1137 1325 IPR029411 -
Cma04g00857 1331 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Cma04g00857 1331 SUPERFAMILY Galactose-binding domain-like 1135 1326 IPR008979 -
Cma04g00857 1331 Pfam Protein kinase domain 350 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00857 1331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Cma04g00857 1331 SUPERFAMILY Galactose mutarotase-like 710 990 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cma04g00857 1331 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 708 1330 - -
Cma04g00857 1331 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 708 1330 - -
Cma04g00857 1331 Coils Coil 310 330 - -
Cma04g00857 1331 Pfam Rhamnogalacturonate lyase family 712 897 IPR010325 -
Cma04g00857 1331 Pfam Legume lectin domain 31 269 IPR001220 GO:0030246
Cma04g00857 1331 CDD RGL4_C 1139 1326 - -
Cma04g00857 1331 Pfam Polysaccharide lyase family 4, domain II 1051 1124 IPR029413 -
Cma04g00857 1331 Gene3D - 704 1000 IPR014718 GO:0030246
Cma04g00857 1331 CDD lectin_legume_LecRK_Arcelin_ConA 32 267 IPR001220 GO:0030246
Cma04g00857 1331 Gene3D - 1025 1126 - -
Cma04g00857 1331 SUPERFAMILY Starch-binding domain-like 1028 1125 IPR013784 GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00450 Cma-Chr2:2333105 Cma04g00857 Cma-Chr4:4387318 0 dispersed
Cma02g00451 Cma-Chr2:2340668 Cma04g00857 Cma-Chr4:4387318 0 dispersed
Cma04g00857 Cma-Chr4:4387318 Cma16g00737 Cma-Chr16:3907023 0 dispersed
Cma09g00597 Cma-Chr9:2782929 Cma04g00857 Cma-Chr4:4387318 3.99E-147 dispersed
Cma16g00960 Cma-Chr16:7435658 Cma04g00857 Cma-Chr4:4387318 1.44E-140 dispersed
Cma19g00490 Cma-Chr19:5826667 Cma04g00857 Cma-Chr4:4387318 2.87E-160 dispersed
Cma04g00854 Cma-Chr4:4378553 Cma04g00857 Cma-Chr4:4387318 6.04E-150 proximal
Cma03g00853 Cma-Chr3:6372866 Cma04g00857 Cma-Chr4:4387318 0 wgd
Cma04g00857 Cma-Chr4:4387318 Cma07g00583 Cma-Chr7:2520291 5.08E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68485 PF00069 Pkinase 2.10E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00857 - K18195 csv:101215252 1078.54