Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00857 | ATGGCCATTTCCAATCTTGGAGTTCAAACAAACCACCATTTTCATGCACTTCAAGTCTTCATCTTCTCTTTCATTCTCTTCAAGGTTCATTCACTTTCCTTCAACTTCCCCAACTTTCAACCAAACAATCTCGACATATTCTTCGAAGGTGATAGCTCCACCAGCAATGATGTTATTCAACTTACAAAGAACCGAGCCGACGCCTCCCTCACCGAGAGTGCCGGCCGAGCTTCCTACGCCAAGCCGATACGCCTATGGGACGCCTCCACAGGACAGGTTGCGGACTTCACCACCCACTTCTCCTTTAGAATCAACACACTTAACCAAACTGTATTTGGTGATGGCATAGCCTTCTTCATCGTCCCTTACAATTCCACAATCCCACCTAACTCAACAGGGGGTTTTCTTGGATTATTCAGCTCCGACTCTGCTTTTGATACCTCCAAGAATCAAGTTTTTGCTGTTGAATTTGACAGTAAGAAGGATGATTGGGACTCGAAGGAAGATCATATAGGAATCAATATCAATTCCATTAATTCTACTCGTCATCTTAATTGGAACTCCAGCATGAAGGATAACCGATTGGCCAATGCCTGGATAACATACAATTCCTCCACTAAAAATTTGTCTGTGTATCTAACTTATGATCACGATCCGATTTTTACTGGAAATTTTAGCATCTCAGCTTCTGTTGACTTGAAAAGTTTATTGCCTGAAAAGGTCAGAATTGGATTCTCCGCAGCTACGGGGGACTGGTATCAAATACATAACATGATTTCTTGGAACTTCAATTCAACCTTGGACGATAATACTGGAGGTGGAGGTGGAGGTGGAGATAAAAATAAAAATATTGGTTTGGCCATTGGCCTAGGTGTTGGGCTTGGTGTTTTGATATGTGGGTTGGGCTTGTTCGGCTTTGTTTGGCGGAGGAAACAATTGAGAAGCAGAATGGAAGATGTGGAAGATCTTATGGATGATGAGTTTGAAAGAGGAACTGGCCCAAAAAGGTTCACTTATAGGGAATTAACTCAAGCCACAAAGAATTTTGATGAGGTCGGCAAGCTTGGGGAAGGAGGGTTTGGAGGTGTTTACAAGGGTTTGTTAACCGAATCAGATACAGAAATCGCGGTAAAGAGGGTTTCCAGAGGATCAAGACAGGGGAAAAAAGAGTACGTCTCTGAAGTGAAGATTATAAGTCGTTTGAGGCATAGGAATCTTGTTCAGCTCCTCGGTTGGTGCCATGAACGAGGCGATTTCCTTTTGGTTTATGAGTTCATGCCCAATGGCAGCCTGGATACCCACCTCTTCAAAGGTAAAACCATGCTAACTTGGGAGGTTCGATACAAAATAGCTGTAGGTTTGGCTTCTTCTTTGCTATATCTTCACGAAGAATGGGAACAATGTGTGGTGCATAGAGATATCAAGTCCAGCAATGTAATGCTGGACTCGCATTTCAACGCCAAACTCGGGGATTTCGGGCTTGCAAGGTTTGTGGACCATGAGATGGGCTCACAAACTACTGTTCTGGCTGGCACCATGGGGTATCTAGCCCCAGAGTGTGTGACGGATGGCAAGGCCAGTAAAGAATCAGATGTTTACAGTTTTGGTGTGGTTGCTCTTGAGATTGCCTGTGGACGGCGGCCAGTAGAAGCAAGAGCCGAGCCTGATCAAGTGAGGCTTGTGGAGTGGGTGTGGGGGATGTATGGCAGAGGCCAAGTCCTAGAAGCTGCAGACAAGAGACTGGCAATGGACTTCGATGAGCAACAAATGGAGGGTTTGATGGTGGTGGGATTATGGTGCTGCCACCCTGACTTCAAGATGCGTCCCTCCATAAGACAGGTGATTAATGTTCTAAATGTTGAAGCTCCACTGCCCGCCCTGCCTTCAAAGTTACCCGTGCCGATGTACTTTGCACCGCCGTTGGATTTATGCAAGTTTACGTACACATCGACAGGCTCCACCGAGACGCCAGTGGATAGAAGTGAGTGTTCATGTAGTAATTGTTCGAATTACACCACAAAATCATCAGGATCAACTATGGGGTTTGGCCCTTTGGTGCACAGCCATGGCTGCCGCTTTCTTCTTCTTCTTCTTTCCTCTCCACCCCAGTACCAATCGGATTCCGACCACCCCACTAAGGTCGTGATGGATAATGGTATTGTCCAAGTTACTCTGTCCACCCCAGATGGTGACGTGGTTGGATTGAGCTACAATGGAATCGATAACATTCTGGACACCAAAACCGAAGCGCCGAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAAACGAACACATTAACACTGACAGATTACTAGGAACCACGTTTAAAGTGATAGTATCCAACGACGAGCAACTGGAAATCTCGTTTGTCAAAACATGGAGCGTTGCAGTTGGGAACAAGAACGCCCCTGTCAATGTAGACAAAAGGTTCGTGTTGCTGAGAGGAAGCTCTGGGTTTTATACGTATGCCATATTCGAGAGGCTGACCGGGTGGCCGGAGATTGAAATGGATCAAGTTAGGATCGTTTTCAGACCTCAGAAAAAAATGTTTGATTACATGGCTGTATCGGACAGTAGACAGAGAGTGATGCCGACAATGGACGACCGAGATAATGGTGATCCATTGGCGTACCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATGAGAAACTCAGAGGAGAGGTAGATGACAAGTACATGTACTCAATAGAGGACAAGGATAACCTAGTTCACGGCTGGATCTCCAGAAATCCACCGACTGGATTCTGGATGATCACTCCTAGTGACGAGTTCCGCGTCGCCGGTCCGGTCAAGCAGGATCTGACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAACGGATGTGGGCATGAAATTTGCAAAAGGAGAGCCTTGGAAGAAGGTCTTCGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCCCTAAGGAGGATTATCGTTCTCTATGGCAAGATGCCAAACAACAGTTGGCAACGGAAATCAGTAAGTGGCCCTATACGTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGCGTCGCCGGCCGGTTACTAATCCGTGATGGGTCTATTAGCGACAGACTTTTGCGTGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCCTGGCAAAGGGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGACAGTCACGGCAGCTTCTTAATCAATAACGTCCGAGAAGGAGTTTATAATCTTTATGCTTTTGTTCCTGGCTTTATTGGAGACTACAAGTATGAGGGAAATATAACAATCAAGGCTGGGTCTAAAACTAAATTGGATGAGATGGTGTTTGATCCGCCGAGACAGGGCCCAACCATCTGGGAGATCGGCATTCCCGACCGCACAGCAGCGGAGTTTTATGTGCCCGACCCTTTTCCGACTCTCATGAATAAACTATACATTGACCATGATGACAAGTTCAGACAATATGGGTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACTGTTGGTGTGGATAATTATACCCAGGACTGGTTCTATGCTCATGTTACCAGGGATGTGGGGAATCAAACATACGAAGCAACCACATGGGAGATCAGATTTTCATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTGGCATCTGCTGCTGATTGCGAATTACAGGTTCGGTTAAACGATAAAAAGTCGAGCCGACCCGGGTTTACGACAGGAAGGATCGGAAGGGACAACGCAATTGCAAGGCATGGGATTCATGGGCTTTACTGGTTATACTCGGTGCCTTTCCCTGGCACTCAATTTCTGAAAGGGAACAACTCCATGTATTTCACTCAGGCAAGAGGCCAAGGCCCTTTCCAAGGTCTCATGTACGACTACGTTCGACTCGAAGCTCCACCTCGAACATAA | 3996 | 46.55 | MAISNLGVQTNHHFHALQVFIFSFILFKVHSLSFNFPNFQPNNLDIFFEGDSSTSNDVIQLTKNRADASLTESAGRASYAKPIRLWDASTGQVADFTTHFSFRINTLNQTVFGDGIAFFIVPYNSTIPPNSTGGFLGLFSSDSAFDTSKNQVFAVEFDSKKDDWDSKEDHIGININSINSTRHLNWNSSMKDNRLANAWITYNSSTKNLSVYLTYDHDPIFTGNFSISASVDLKSLLPEKVRIGFSAATGDWYQIHNMISWNFNSTLDDNTGGGGGGGDKNKNIGLAIGLGVGLGVLICGLGLFGFVWRRKQLRSRMEDVEDLMDDEFERGTGPKRFTYRELTQATKNFDEVGKLGEGGFGGVYKGLLTESDTEIAVKRVSRGSRQGKKEYVSEVKIISRLRHRNLVQLLGWCHERGDFLLVYEFMPNGSLDTHLFKGKTMLTWEVRYKIAVGLASSLLYLHEEWEQCVVHRDIKSSNVMLDSHFNAKLGDFGLARFVDHEMGSQTTVLAGTMGYLAPECVTDGKASKESDVYSFGVVALEIACGRRPVEARAEPDQVRLVEWVWGMYGRGQVLEAADKRLAMDFDEQQMEGLMVVGLWCCHPDFKMRPSIRQVINVLNVEAPLPALPSKLPVPMYFAPPLDLCKFTYTSTGSTETPVDRSECSCSNCSNYTTKSSGSTMGFGPLVHSHGCRFLLLLLSSPPQYQSDSDHPTKVVMDNGIVQVTLSTPDGDVVGLSYNGIDNILDTKTEAPNRGYWDAVWNNPNEHINTDRLLGTTFKVIVSNDEQLEISFVKTWSVAVGNKNAPVNVDKRFVLLRGSSGFYTYAIFERLTGWPEIEMDQVRIVFRPQKKMFDYMAVSDSRQRVMPTMDDRDNGDPLAYPEAVLLTNPANEKLRGEVDDKYMYSIEDKDNLVHGWISRNPPTGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGTDVGMKFAKGEPWKKVFGPVFVYLNSASPKEDYRSLWQDAKQQLATEISKWPYTFPQSEDFPSSAQRGSVAGRLLIRDGSISDRLLRASNAFVGLALPGPVGSWQRESKGYQFWTQADSHGSFLINNVREGVYNLYAFVPGFIGDYKYEGNITIKAGSKTKLDEMVFDPPRQGPTIWEIGIPDRTAAEFYVPDPFPTLMNKLYIDHDDKFRQYGLWERYAAMYPNNDLVFTVGVDNYTQDWFYAHVTRDVGNQTYEATTWEIRFSLQSVNQTANYTLQIALASAADCELQVRLNDKKSSRPGFTTGRIGRDNAIARHGIHGLYWLYSVPFPGTQFLKGNNSMYFTQARGQGPFQGLMYDYVRLEAPPRT | 1331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4387318 | 4395545 | + | CmaCh04G008570.1 | Cma04g00857 | 291938 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00857 | 1331 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 30 | 267 | IPR013320 | - | |
Cma04g00857 | 1331 | SMART | serkin_6 | 349 | 624 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g00857 | 1331 | ProSiteProfiles | Protein kinase domain profile. | 349 | 627 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g00857 | 1331 | ProSitePatterns | Protein kinases ATP-binding region signature. | 355 | 378 | IPR017441 | GO:0005524 | |
Cma04g00857 | 1331 | Gene3D | - | 1135 | 1326 | - | - | |
Cma04g00857 | 1331 | CDD | STKc_IRAK | 363 | 619 | - | - | |
Cma04g00857 | 1331 | CDD | RGL4_N | 708 | 992 | - | - | |
Cma04g00857 | 1331 | ProSitePatterns | Legume lectins alpha-chain signature. | 237 | 246 | IPR000985 | - | |
Cma04g00857 | 1331 | Gene3D | - | 29 | 273 | - | - | |
Cma04g00857 | 1331 | CDD | RGL4_M | 1028 | 1124 | IPR029413 | - | |
Cma04g00857 | 1331 | SUPERFAMILY | Protein kinase-like (PK-like) | 333 | 645 | IPR011009 | - | |
Cma04g00857 | 1331 | Gene3D | Transferase(Phosphotransferase) domain 1 | 426 | 638 | - | - | |
Cma04g00857 | 1331 | Pfam | Polysaccharide lyase family 4, domain III | 1137 | 1325 | IPR029411 | - | |
Cma04g00857 | 1331 | Gene3D | Phosphorylase Kinase; domain 1 | 334 | 425 | - | - | |
Cma04g00857 | 1331 | SUPERFAMILY | Galactose-binding domain-like | 1135 | 1326 | IPR008979 | - | |
Cma04g00857 | 1331 | Pfam | Protein kinase domain | 350 | 616 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g00857 | 1331 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 469 | 481 | IPR008271 | GO:0004672|GO:0006468 | |
Cma04g00857 | 1331 | SUPERFAMILY | Galactose mutarotase-like | 710 | 990 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Cma04g00857 | 1331 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 708 | 1330 | - | - | |
Cma04g00857 | 1331 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 708 | 1330 | - | - | |
Cma04g00857 | 1331 | Coils | Coil | 310 | 330 | - | - | |
Cma04g00857 | 1331 | Pfam | Rhamnogalacturonate lyase family | 712 | 897 | IPR010325 | - | |
Cma04g00857 | 1331 | Pfam | Legume lectin domain | 31 | 269 | IPR001220 | GO:0030246 | |
Cma04g00857 | 1331 | CDD | RGL4_C | 1139 | 1326 | - | - | |
Cma04g00857 | 1331 | Pfam | Polysaccharide lyase family 4, domain II | 1051 | 1124 | IPR029413 | - | |
Cma04g00857 | 1331 | Gene3D | - | 704 | 1000 | IPR014718 | GO:0030246 | |
Cma04g00857 | 1331 | CDD | lectin_legume_LecRK_Arcelin_ConA | 32 | 267 | IPR001220 | GO:0030246 | |
Cma04g00857 | 1331 | Gene3D | - | 1025 | 1126 | - | - | |
Cma04g00857 | 1331 | SUPERFAMILY | Starch-binding domain-like | 1028 | 1125 | IPR013784 | GO:0030246 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00450 | Cma-Chr2:2333105 | Cma04g00857 | Cma-Chr4:4387318 | 0 | dispersed | |
Cma02g00451 | Cma-Chr2:2340668 | Cma04g00857 | Cma-Chr4:4387318 | 0 | dispersed | |
Cma04g00857 | Cma-Chr4:4387318 | Cma16g00737 | Cma-Chr16:3907023 | 0 | dispersed | |
Cma09g00597 | Cma-Chr9:2782929 | Cma04g00857 | Cma-Chr4:4387318 | 3.99E-147 | dispersed | |
Cma16g00960 | Cma-Chr16:7435658 | Cma04g00857 | Cma-Chr4:4387318 | 1.44E-140 | dispersed | |
Cma19g00490 | Cma-Chr19:5826667 | Cma04g00857 | Cma-Chr4:4387318 | 2.87E-160 | dispersed | |
Cma04g00854 | Cma-Chr4:4378553 | Cma04g00857 | Cma-Chr4:4387318 | 6.04E-150 | proximal | |
Cma03g00853 | Cma-Chr3:6372866 | Cma04g00857 | Cma-Chr4:4387318 | 0 | wgd | |
Cma04g00857 | Cma-Chr4:4387318 | Cma07g00583 | Cma-Chr7:2520291 | 5.08E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68485 | PF00069 | Pkinase | 2.10E-49 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00857 | - | K18195 | csv:101215252 | 1078.54 |