Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00859 ATGGCTCCTGCGACTAACTGGCTTTCCTTTTCCCTCTCTCCCATTGAAATGCTTCGCTCTGCTGACTCTCAGTTTGTTCCTTATGAAACCTCCTCCACCGCCTCTCCTCACTATCTCTTAGACAACTTATACTCCAATAATGGATGGAGTAATAGTACTAATGCTCACTCCAAATCATCATCCCAACTTTTCTTCATGGATGGAGATGAAAACAATGAGGTTATCAAAGAAGATCATCATAATCAATCGACACCCGCCATTTATACGAGCTATCTTCATCCACAAACCCACCACCAACCCAAACTGGAAGATTTCCTCGGCGATTCCTCGCCGATGGTACGGTATTCCGACAGCCAGACGGAGACTCAAGATTCGTCTTTGACTCATATTTACGACCATGGCTCGGCACCCTATTTTGGGGACCAACAGGAACTCAAAACCATTGCGGCGTTTCGTGCTTTTTCTGGGAACTCCGGCTCTGAAGTTGACGATTCGGCTTCTATGGGGAGAACCCAGATCGCGGCCGGTGCTCATTCTATTGAGTCTTCGGTTAGAAATGAGTTGGGGACTTTCTCTAGCTGCCCCACGGGTGCTCTTTCCCTCGCCGTTGCGCAGAGCTCTGACACGGTGACAGCTGGGGGTGTCGTGGCGGTTGACTCCGATTCGTCCAAGAAAATTGCGGATACCTTTGGGCAGCGAACATCAATTTACAGAGGAGTCACTAGGCACAGGTGGACGGGTAGATACGAGGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAAGATAAGGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACTGCAACCACCAATTTTCCTGTTTCGAATTACGCCAAAGAATTGGAAGAGATGAAACATGTCACCAAGCAAGAGTTTATTGCATCTTTGCGTAGAAAAAGCAGTGGTTTTTCGAGGGGTGCGTCTATTTATAGAGGTGTGACGAGGCATCATCAGCAAGGTCGATGGCAGGCGAGGATTGGGCGTGTTGCAGGGAATAAGGATTTGTATCTCGGGACGTTTGCTACTGAGGAGGAAGCTGCTGAGGCATATGATATAGCAGCGATCAAGTTTAGGGGTTTGAATGCTGTGACGAACTTTGAGATGAATCGATACGATGTGGAGGCTATTGCGAAGAGTGCGCTGCCAATTGGGGGAGCTGCAAAAAGGCTGAAGCTTTGCCTTGAATCGGATCAGAAGCAGATATCAAATCATGATCAAGCAGCCCAATGCAGCAGTGGAAGCAACAGCATCAACTTCGGCGCCCCTATTCAGTCCATGCCACCCATCCCCTGTGGAATTCCATATGATACTGCAGCCATGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAACCCTCTCGGCTCGTTGGAGTCGACCACCCCAGCCATTGGAGCATCTACCATGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTGCCATCCCGGAGAAGATGGATTGCTTCTTTGGTTTGACGCCGAAGATGAACGAACGAGAGCTTTTTCCCTGTCTTCTATTCCACTCAAGAACAACTGCTGCCAATTTGGTTCATCTACTTCATTCACTACTTGCAATTCTTCGTCTTTTTCTATATTAATTGCCTCTGAACAATTCCTCTTCATTATCTTCTTCATCATCTTCTTCTTCTTCTTATTCTCTACTTTAACTTCTCTTCCATTTCCAGGGGAACCATTATCGTCGTTCTTCTCGGGATTGCCAACCGACAAGTCGACAACAATTCCTTCCGGACCTATGGCTCTTTCAACTTCTCTGGTTGTTCAAGCTGCACCATGTTTACGGAAGATCCTGGCTCGGAACCCTCATCTTGCTGTATGCTTGGCAGTTTACCAGACAGATGATCAAGATTACAATGTGCCTCAATTATTTGGGATTGGAAATGGGTTTTCTCATTCTCAAGTTTCTGGTTCAGATTCTGAAGCTCACTCAGTTTCGTCTCCGTATCCTTTAGCTTCTGTTGTAGAATGTTGTTTCCATCAATTATGGATGTCTTCCCATCTTCCAGAGTTCGTATCTGTGTTTGCAGAAATTGTGTCTGGAATGGCTGGGGGAGGAATGATCCGGCACTTACTCAGGAAATTTCCATCTCAATCTTCTACCCCTCCTTTGACCTCTTCCCTTATTTCAAAAAACGAGGAAGCTGGCTTTGCTGGGATGAACTCCTTTAGAAGGCTTGCGCTACTTGGAGCAGGCATTTCTGGATTTTTCAGTTTTGCAACTTTGGCATCTGCTGATGAGGCAGAACATGGCTTGGAGTGTCCAAACTATCCCTGGCCTCACCAGGGCATTTTGAGTTCATATGATCATGCTTCGATTCGGCGTGGTCATCAGGTTTATCAACAAGTGTGTGCATCTTGTCATTCCATGTCTTTGATATCATATCGTGATTTGGTTGGTGTTGCATATACTGAAGAGGAGACGAAAGCAATGGCTGCTGAAATTGAGGTAGTGGATGGGCCTAATGATGAGGGTGAGATGTTCACTCGTCCAGGTAAACTCAGTGATCGGTTTCCTGAACCATATGCCAATGAGCAAGCTGCTAGATTTGCTAATGGTGGAGCTTACCCTCCGGATCTAAGCCTCATCACAAAGGCTCGTCATAATGGTCAGAATTATGTATTTTCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGATCCGAGAGGGTCTGCACTATAACCCTTATTTCCCTGGCGGAGCAATTGCAATGCCTAAGATGCTTAATGATGGAGCTGTTGAATACGAAGATGGTACCCCTGCAACAGAAGCACAGATGGGGAAAGATGTTGTGTCATTCTTGTCATGGGCAGCTGAACCAGAAATGGAAGAAAGGAAACTGATGGGATTCAAATGGATCTTCGTGCTCTCTTTGGCTCTACTTCAGGCCGCATACTACCGACGATTGAAGTGGTCAGTTTTGAAGTCCCGCAAGCTGGGGGGGAGGTGTTGA 3066 46.93 MAPATNWLSFSLSPIEMLRSADSQFVPYETSSTASPHYLLDNLYSNNGWSNSTNAHSKSSSQLFFMDGDENNEVIKEDHHNQSTPAIYTSYLHPQTHHQPKLEDFLGDSSPMVRYSDSQTETQDSSLTHIYDHGSAPYFGDQQELKTIAAFRAFSGNSGSEVDDSASMGRTQIAAGAHSIESSVRNELGTFSSCPTGALSLAVAQSSDTVTAGGVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIAKSALPIGGAAKRLKLCLESDQKQISNHDQAAQCSSGSNSINFGAPIQSMPPIPCGIPYDTAAMLYHHNYFHHLQPNPLGSLESTTPAIGASTMAPQAAEFFVWPHQCHPGEDGLLLWFDAEDERTRAFSLSSIPLKNNCCQFGSSTSFTTCNSSSFSILIASEQFLFIIFFIIFFFFLFSTLTSLPFPGEPLSSFFSGLPTDKSTTIPSGPMALSTSLVVQAAPCLRKILARNPHLAVCLAVYQTDDQDYNVPQLFGIGNGFSHSQVSGSDSEAHSVSSPYPLASVVECCFHQLWMSSHLPEFVSVFAEIVSGMAGGGMIRHLLRKFPSQSSTPPLTSSLISKNEEAGFAGMNSFRRLALLGAGISGFFSFATLASADEAEHGLECPNYPWPHQGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLGGRC 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4401748 4416352 - CmaCh04G008590.1 Cma04g00859 291940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00859 1021 ProSiteProfiles AP2/ERF domain profile. 335 393 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 489 - -
Cma04g00859 1021 SMART rav1_2 335 399 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 SMART rav1_2 236 305 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 Pfam Cytochrome C1 family 794 1010 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 Gene3D - 783 978 IPR036909 GO:0009055|GO:0020037
Cma04g00859 1021 Gene3D AP2/ERF domain 335 395 IPR036955 GO:0003700|GO:0006355
Cma04g00859 1021 Gene3D AP2/ERF domain 236 301 IPR036955 GO:0003700|GO:0006355
Cma04g00859 1021 ProSiteProfiles AP2/ERF domain profile. 236 299 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 CDD AP2 334 393 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 SUPERFAMILY DNA-binding domain 334 394 IPR016177 GO:0003677
Cma04g00859 1021 Pfam AP2 domain 236 291 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 Pfam AP2 domain 335 385 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 SUPERFAMILY Cytochrome c 787 977 IPR036909 GO:0009055|GO:0020037
Cma04g00859 1021 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 PRINTS Ethylene responsive element binding protein signature 375 395 IPR001471 GO:0003700|GO:0006355
Cma04g00859 1021 Gene3D - 979 1018 - -
Cma04g00859 1021 ProSiteProfiles Cytochrome c family profile. 806 913 IPR009056 GO:0009055|GO:0020037
Cma04g00859 1021 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 978 1017 IPR021157 -
Cma04g00859 1021 PRINTS Cytochrome C1 signature 792 811 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 PRINTS Cytochrome C1 signature 939 958 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 PRINTS Cytochrome C1 signature 959 978 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 PRINTS Cytochrome C1 signature 890 914 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 PRINTS Cytochrome C1 signature 928 939 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 PRINTS Cytochrome C1 signature 857 877 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 PRINTS Cytochrome C1 signature 978 993 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 PRINTS Cytochrome C1 signature 812 831 IPR002326 GO:0009055|GO:0020037
Cma04g00859 1021 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 489 - -
Cma04g00859 1021 SUPERFAMILY DNA-binding domain 235 301 IPR016177 GO:0003677
Cma04g00859 1021 CDD AP2 235 301 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00810 Cma-Chr4:4147614 Cma04g00859 Cma-Chr4:4401748 4.74E-11 dispersed
Cma04g00859 Cma-Chr4:4401748 Cma05g00792 Cma-Chr5:5023853 1.36E-117 dispersed
Cma16g00743 Cma-Chr16:3982680 Cma04g00859 Cma-Chr4:4401748 0 transposed
Cma16g00739 Cma-Chr16:3918946 Cma04g00859 Cma-Chr4:4401748 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34816 PF02167 Cytochrom_C1 1.60E-96 CL0318 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00859 K09285 - csv:101217714 785.793