Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00875 ATGGCGAGTACCAAGGTGAAAGAGCCAGTTTGTGTGACCGGAGCCAATGGGTTCATCGGATCTTGGGTCATCGGTACGCTGTTGGAAGCCGGTTACACTACCATTCATGCCTCGATCTTCCCCGGCTCCGATGCTTCCCATTTGTTCAATCTCCAGGCCTCCGCTAACCCTAATTCCACTCTTCGGATTTTCGAAGTGAACGTAACGGACGGCGAGGCTGTGGCCAGGGCTGTAGAAGGCTGCAAGGGCGTATTCCACATTGCGTCACCCTGCACGCTGGAGGATCCTATTGATCCACAGAAAGAATTGGTGGAGCCGGCAGTGAAAGGCACTCTTAATGTTCTTGAGGCTGCGAAGAAACTTGGGGTCCGGCGCGTTGTTCTTACTTCTTCTATTTCGGCTCTTGTTCCCAACCCTGGCTGGCCATCCGACAAGCCATTTGATGAATCGTCGTGGACAGACCTGGAGTACTGCAAATCGCGAAAGAAATGGTATCCAGTGTCAAAAACATTAGCAGAGAAAGCAGCATGGGAATTTGAAAAGAAGCATGGATTGGATGTAGTTTCCATCCTGCCTGCCACATGTCTTGGTCCTCTTCTGCAACCAAATTTGAATGCAAGCTGTGCTGTGTTGCAGCAGTTGCTCCAAGGATCAAAGGACAGTCAGGAGTATCACTGGTTGGGTGCTGTGCATGTCAAAGATATTGCAAAAGCACAAGTATTGTTGTTCGAGTCTCCCACTGCTTCTGGTAGATATCTCTGCACCAATGGTATCTATCAATTTGCCGATTTTGCCGACGAAGTCTCGAAAATCTACCCTGAATTTCCTGTTCACAGATTTGTGGGAGAAACACAACACCACTTGGTTGCCTGCAAAGATGCAGCCAAGAGGTTGATTGATCTGGGACTTATCTTCACCCCTCTTGAAGTTGCAATTCGAGATACGGTTGAGAGCCTTAGAAGCAAAGGTTTTCTGAAGAACCTACCGGCTGCCAAACACCCCTCCTTCTACAACCCCAAGGCTTCCATGGACAACGAACACTCTCCTCATCACCCACTTCTTCCGGCGCCCGAAGACCAGTTTCCGGCGACCGGAAATACATCGGCGATCGTTTCTTCGACGAAATGGGTTCTGAAATTGGCGATGTGGGTGATCTTCAGTGTATGGATGGTGGTTATATTTCTGTATCCATCTTCCTTCGCCTCTCACCTGTTTAGCGAATGGTTTGGAGCCTCCGGACAAACCCTTTTTGGAATCACAGGCGCCATCTTCCTGACTTTCAGTGCGCCACTTCTGGCCATCGCTATCCTCGCCGCCGTATATCTCATCATTTCTCGCGACGACCAGCCTTACGAGAGGAGGAAGAAGAAGAAGAATGGGAAAGAGAAGCCGAGATGGAGGCTCTGGACTTTGCCGGTGCTGGTGGAAGGGCCGTTGGAGGTAGTTACGGCGGCGGAGTTGGTTGGGATTTTGGTGGTCTTGGGCTATGTTTTCTGGGCTTTTTACAGCTACACCTTGCGAATGCTGGCCACTGATTTCTCTCGGAATTTAACTTTCTTACAAATAAGTTGTGAGGTGCTGGAAGTTATGGGGTTGAGGCTTGGTTCAATGGGATTATTCTGTTTAGGGTTTCTGTTTCTGCCAATTTCGAGGGGTTCGGTCCTTCTGCGCCTTATCGACATTCCATTCGAGCACGCCACTAGGTACCATGTTTGGTTGGGTCATCTCACTATGCTCATTTTTACTCTTCATGGCTTAGCTTTTCTCATTCAATGGTTAATCCAAGGTCGTTGCATCGAGCAATTGTTGGAGTGGAAAGACATCGGCATCGCGAATCTTCCTGGAGTTATCAGCCTTTTGGCAGGGCTGTTGATGTGGATTACCTCTCTTCCCAAACTCAGAACCATCAACTTCGAATTGTTCTTCTACACTCATCAATTATACATCGTGTTCGTCTTGTTCTTGGCCCTGCACGTCGGCGATTTCGTCTTCAGCATTGCCGCCGGGGGAATCTTCATCTTCATGCTCGATCGCTTCCTCAGATTTATTCAATCCAGAAGAACCGTGGATGTAATTTCCGCCAAGGCGCTCCCCTGCGGAACGGTGGAATTGATCATCTCGAAACCTAAAAGCCTGCGATATAATGCGCTGAGTTTCATCTTCCTGCAAGTCAGAGAGCTGTCGCTGCTGCAATGGCATCCGTTCAGTGTGTCATCGAGTCCACTGGAAGGGGAGGATCGGCTGGCGATTCTGATAAAAGTGCTTGGGAAATGGACAGAGAAGCTGCGGGGAAAGATCTTGAATGATAAAGCCAAAGAGATTTCTTCTGATAAGCATCAATCTGTAATGACTGTTTCTGTTGAGGGACCTTATGGCCATGAATCTCCATATCACTTGATGTATGAAAATCTAATATTAGTAGCAGGGGGAATTGGAATTTCGCCGTTTCTAGCCATCTTGAGTGACATTCTCCATCGTATAAGAGATGGGAAGCCATGTTTACCAAAGAAGATCTTGGTTGTTTGGGCAATCAAAAACTCATCTGAGCTTCCTCTTCTCTCAACCCTCAATGTGGACTCCATTTGTCCATTCTTCGCTGATAAGCTCAACATTGACATCTCCATCTACGTTACCAGACAGTCGCAACCACCACCGGAAGGTGAAATCCAACCCTCAAAGGTGACTTCAATATGTCCACTGTCAAAGGGATCCAACATGTCTGTGTTGGTTGGAACCGGTGACAATGTGTGGTCAGGGCTGTATGTTATTTCCTCGACAGTTGGCCTTGTGATCTTAGTGAGCTTGATGGACTTCTATTACATCAACCCTTTTAACATCAAGAAGTGGTGGTACAAAGGCCTTCTCTTTTTTCTCTGCATGGTTGCTAGCGTTGTCCTCTTTGGAGGCCTTGTGGTTGGTTTATGGAGCCTTTGGGAAGAACACATTTCAAGTAAAAGAACTACTCACAACAACGTTAATGACATTGAAAAAGTAGGTGAAGACATTCCCAAAGACACTCTTGCACAAAAGGATTTGAATCCCAAGGCCTTTGCTAACTCCACCACTATCGAGTATGGAACCAGACCAAATTTCGACGAAATTGTTGAATCGGTAGCAGAGAATTGGGGGAAGGTAGACATTGGTGTGTTGATTTGTGGTCCTTCAACACTTCAATCAAGCGTAGCAAAAGCAATTAGGTCACACAACATGGTAAGACGACGCACCCATCATCCAATCTTCCATTTTCACAGCCATAGTTTTGATCTTTGA 3270 47.25 MASTKVKEPVCVTGANGFIGSWVIGTLLEAGYTTIHASIFPGSDASHLFNLQASANPNSTLRIFEVNVTDGEAVARAVEGCKGVFHIASPCTLEDPIDPQKELVEPAVKGTLNVLEAAKKLGVRRVVLTSSISALVPNPGWPSDKPFDESSWTDLEYCKSRKKWYPVSKTLAEKAAWEFEKKHGLDVVSILPATCLGPLLQPNLNASCAVLQQLLQGSKDSQEYHWLGAVHVKDIAKAQVLLFESPTASGRYLCTNGIYQFADFADEVSKIYPEFPVHRFVGETQHHLVACKDAAKRLIDLGLIFTPLEVAIRDTVESLRSKGFLKNLPAAKHPSFYNPKASMDNEHSPHHPLLPAPEDQFPATGNTSAIVSSTKWVLKLAMWVIFSVWMVVIFLYPSSFASHLFSEWFGASGQTLFGITGAIFLTFSAPLLAIAILAAVYLIISRDDQPYERRKKKKNGKEKPRWRLWTLPVLVEGPLEVVTAAELVGILVVLGYVFWAFYSYTLRMLATDFSRNLTFLQISCEVLEVMGLRLGSMGLFCLGFLFLPISRGSVLLRLIDIPFEHATRYHVWLGHLTMLIFTLHGLAFLIQWLIQGRCIEQLLEWKDIGIANLPGVISLLAGLLMWITSLPKLRTINFELFFYTHQLYIVFVLFLALHVGDFVFSIAAGGIFIFMLDRFLRFIQSRRTVDVISAKALPCGTVELIISKPKSLRYNALSFIFLQVRELSLLQWHPFSVSSSPLEGEDRLAILIKVLGKWTEKLRGKILNDKAKEISSDKHQSVMTVSVEGPYGHESPYHLMYENLILVAGGIGISPFLAILSDILHRIRDGKPCLPKKILVVWAIKNSSELPLLSTLNVDSICPFFADKLNIDISIYVTRQSQPPPEGEIQPSKVTSICPLSKGSNMSVLVGTGDNVWSGLYVISSTVGLVILVSLMDFYYINPFNIKKWWYKGLLFFLCMVASVVLFGGLVVGLWSLWEEHISSKRTTHNNVNDIEKVGEDIPKDTLAQKDLNPKAFANSTTIEYGTRPNFDEIVESVAENWGKVDIGVLICGPSTLQSSVAKAIRSHNMVRRRTHHPIFHFHSHSFDL 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4497614 4505996 - CmaCh04G008750.1 Cma04g00875 291956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00875 1089 Gene3D - 978 1087 IPR039261 -
Cma04g00875 1089 Gene3D - 785 920 IPR039261 -
Cma04g00875 1089 Gene3D - 2 337 - -
Cma04g00875 1089 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 684 797 IPR017927 GO:0016491
Cma04g00875 1089 Pfam FAD-binding domain 690 794 IPR013112 GO:0016491
Cma04g00875 1089 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 784 857 IPR039261 -
Cma04g00875 1089 PANTHER NADPH OXIDASE 348 1088 - -
Cma04g00875 1089 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 320 IPR036291 -
Cma04g00875 1089 CDD NOX_Duox_like_FAD_NADP 691 879 - -
Cma04g00875 1089 Pfam NAD dependent epimerase/dehydratase family 10 248 IPR001509 -
Cma04g00875 1089 CDD FR_SDR_e 10 303 - -
Cma04g00875 1089 SFLD Ferric reductase subgroup (FRE) 372 1089 - -
Cma04g00875 1089 Pfam Ferric reductase like transmembrane component 534 655 IPR013130 -
Cma04g00875 1089 Pfam Ferric reductase NAD binding domain 801 1064 IPR013121 GO:0016491
Cma04g00875 1089 SFLD Ferric Reductase Domain 440 1089 - -
Cma04g00875 1089 PANTHER FERRIC REDUCTION OXIDASE 7, CHLOROPLASTIC-LIKE 348 1088 - -
Cma04g00875 1089 SUPERFAMILY Riboflavin synthase domain-like 688 793 IPR017938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00875 Cma-Chr4:4497614 Cma13g00044 Cma-Chr13:430330 3.34E-100 dispersed
Cma17g00031 Cma-Chr17:140875 Cma04g00875 Cma-Chr4:4497614 3.73E-08 dispersed
Cma04g00875 Cma-Chr4:4497614 Cma16g00106 Cma-Chr16:474290 1.46E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00875 K00521 - csv:101213325 1221.84