Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00878 | ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTTAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCGGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGGTGGGTTTTCTTTCTCTTCTATCGTTCTCTTGATAAAGAATTTCTTATATTTGTCCGAGACAATTCTTGTCATGCTTATAGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCCCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTAAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAATCGGGTGGGAAGATGTCCAGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGACGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGATGAATTCTGGATTTGTTGTGATGTATGTGAAAGATGGTTCCATGGAAAGTGTGTGAAGATTACACCTGCCAAGGCCGAGCATATCAAACAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA | 849 | 46.17 | MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPGGFSFSSIVLLIKNFLYLSETILVMLIEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSGGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4526704 | 4533142 | + | CmaCh04G008780.1 | Cma04g00878 | 291959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00878 | 282 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 277 | IPR013083 | - | |
Cma04g00878 | 282 | SMART | PHD_3 | 228 | 276 | IPR001965 | - | |
Cma04g00878 | 282 | MobiDBLite | consensus disorder prediction | 190 | 209 | - | - | |
Cma04g00878 | 282 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 6 | 1 | 282 | - | - | |
Cma04g00878 | 282 | MobiDBLite | consensus disorder prediction | 166 | 228 | - | - | |
Cma04g00878 | 282 | SUPERFAMILY | FYVE/PHD zinc finger | 217 | 279 | IPR011011 | - | |
Cma04g00878 | 282 | MobiDBLite | consensus disorder prediction | 166 | 189 | - | - | |
Cma04g00878 | 282 | CDD | PHD_AL_plant | 229 | 278 | IPR044104 | - | |
Cma04g00878 | 282 | Pfam | PHD-finger | 229 | 278 | IPR019787 | - | |
Cma04g00878 | 282 | ProSiteProfiles | Zinc finger PHD-type profile. | 226 | 278 | IPR019787 | - | |
Cma04g00878 | 282 | ProSitePatterns | Zinc finger PHD-type signature. | 229 | 275 | IPR019786 | - | |
Cma04g00878 | 282 | PANTHER | CPG BINDING PROTEIN | 1 | 282 | IPR045104 | GO:0006355|GO:0042393 | |
Cma04g00878 | 282 | Pfam | Alfin | 11 | 43 | IPR021998 | GO:0006355|GO:0042393 | |
Cma04g00878 | 282 | Pfam | Alfin | 71 | 165 | IPR021998 | GO:0006355|GO:0042393 | |
Cma04g00878 | 282 | MobiDBLite | consensus disorder prediction | 210 | 227 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00878 | Cma-Chr4:4526704 | Cma08g00788 | Cma-Chr8:4745716 | 5.40E-103 | dispersed | |
Cma16g00752 | Cma-Chr16:4049411 | Cma04g00878 | Cma-Chr4:4526704 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34818 | PF12165 | Alfin | 1.50E-49 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00878 | - | - | csv:101212601 | 463.381 |