Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00878 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTTAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCGGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGGTGGGTTTTCTTTCTCTTCTATCGTTCTCTTGATAAAGAATTTCTTATATTTGTCCGAGACAATTCTTGTCATGCTTATAGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCCCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTAAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAATCGGGTGGGAAGATGTCCAGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGACGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGATGAATTCTGGATTTGTTGTGATGTATGTGAAAGATGGTTCCATGGAAAGTGTGTGAAGATTACACCTGCCAAGGCCGAGCATATCAAACAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 849 46.17 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPGGFSFSSIVLLIKNFLYLSETILVMLIEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSGGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4526704 4533142 + CmaCh04G008780.1 Cma04g00878 291959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00878 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 277 IPR013083 -
Cma04g00878 282 SMART PHD_3 228 276 IPR001965 -
Cma04g00878 282 MobiDBLite consensus disorder prediction 190 209 - -
Cma04g00878 282 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 6 1 282 - -
Cma04g00878 282 MobiDBLite consensus disorder prediction 166 228 - -
Cma04g00878 282 SUPERFAMILY FYVE/PHD zinc finger 217 279 IPR011011 -
Cma04g00878 282 MobiDBLite consensus disorder prediction 166 189 - -
Cma04g00878 282 CDD PHD_AL_plant 229 278 IPR044104 -
Cma04g00878 282 Pfam PHD-finger 229 278 IPR019787 -
Cma04g00878 282 ProSiteProfiles Zinc finger PHD-type profile. 226 278 IPR019787 -
Cma04g00878 282 ProSitePatterns Zinc finger PHD-type signature. 229 275 IPR019786 -
Cma04g00878 282 PANTHER CPG BINDING PROTEIN 1 282 IPR045104 GO:0006355|GO:0042393
Cma04g00878 282 Pfam Alfin 11 43 IPR021998 GO:0006355|GO:0042393
Cma04g00878 282 Pfam Alfin 71 165 IPR021998 GO:0006355|GO:0042393
Cma04g00878 282 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00878 Cma-Chr4:4526704 Cma08g00788 Cma-Chr8:4745716 5.40E-103 dispersed
Cma16g00752 Cma-Chr16:4049411 Cma04g00878 Cma-Chr4:4526704 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34818 PF12165 Alfin 1.50E-49 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00878 - - csv:101212601 463.381