Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00886 ATGGGTGAGATTCATACTGCAAAACCGTCTCAGAATCCACCTTTCTCCATTCCATCTTCCTCCATTCCATCTTCCTCCATCCCACCTCCTAATCCCATTCATTTCCCTCTTTCTGATCGTTTTCCAAGGCCTGCGAAGCTTATTACTCGACACGGCACTCATCCGATGGACGAGAGTTCAGAGAACGCCCGCGAAATTGATGGCTCTGAGAGGCAGGTGGAATCGCTGTTCTCACAGGATCGAGATTCTATATCGATGATGCTAGGGGAGCCGCTATTGCGTTCCAGTACTGCTAGGATCAGCACCACCTCTCAGCTCGCCATTGTTGGTTCGAATATCTGTCCGATTGAGAGTCTTGACTATGAGATTATTGAGAATGACCTTTTCATGCAAGACTGGAGGTCCAGAAGAAAGATCGAGATATTTCAGTATGTTATCCTCAAATGGGCACTGTGCCTTCTTATTGGTTTAGTTACAGGACTCGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCGTAAACTTCTGCTGACGAACAATCTCATGCTCCAGGAAAAGTACTATCTGGCTTTTTCAGTATATGTGGGTTCCAATATTGTTTTAGCTTTTTCTGCTGCCGCGCTTTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAATGGTATAGATGCTTATTCTATACTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGCTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTTCATACTGGTGCGTGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACCTGGAAGTGGCTGAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATCACGTGTGGTGCAGCAGCTGGTGTGGCAGCTGCCTTTCGAGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTAGCCGTTGTCTTGAGGGGTTTCATGGAATTTTGCCGAGGGGGGCAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTTAACATTCATACAGAAAACTCCACTTATGGCACTCCAGATCTTATTGCAATTGTTTTACTTGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTCCTTCGAACCTACAGCATCATAAATGAGAGAGGTCCTGGATCGAAAGTCATTCTTGTTGTTAGCATTTCCCTATTGACAACATGTATCTCATTTGGTCTTCCTTGGCTCTCACAATGTTTACCTTGCCCACCTAACTTGGAAGACGAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAATTTCCAATGCCCGCCTGGCCAATATAATGATCTTGCGTCGCTATTTTTCAATACCAATGATGATGTCATCCGCAACCTGTTCACATCTGCTACTGACAAGCAATTTCAGCTCTCCTCACTTTTTATCTTCTTTACTTCTATCTATTTTCTTGGCATTATTACTTATGGCATTGCCGTGCCCTCGGGGCTCTTCATTCCTGTAATACTGGCAGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCCACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTTATGTTGGTTCTTCTAATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACGTTCTCTGGGATTGAGAAGGTCGATAACATTATCCATGCTTTGAAAATGACGAACCACAATGGGTTTCCTGTAATTGATGAGCCACCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTTTGAGGTCTCATCTACTTGTTTTGCTTAAAGAGAAAAAATTTACAAAGAAAAAGACGTCAATTAGATCAGAAATTTTGAGGAGCTTCAAAGCATATGATTTTGCAAAACCTGGTTCTGGCAAAGGAGTGAAACTGGAAGATTTGGACATCAACGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATCACAAATACGTCGCCTTACACAGTGGTAGAAACAATGTCTCTGGCTAAAGCAGCGATTCTCTTTCACGCTCTTGGCTTGAGGCACTTACTGGTGGTTCCAAAGACACCCGGGAGGCCTCCTATTGCTGGAATTCTTACAAGGCATGATTTCATGCCGGAATATATTCTGGGACTTTACCCGTATCTCAACCCTCATTACAAGCAAGGTTCGTCCCTTATTACTTTGCCTTCTGTTGAGTTCTTATTTTATGGGAGCAAAATTCATCAGCTGTTTTCAGCGTCTATACCATTCTGTTGGAAATTTTGA 2601 44.18 MGEIHTAKPSQNPPFSIPSSSIPSSSIPPPNPIHFPLSDRFPRPAKLITRHGTHPMDESSENAREIDGSERQVESLFSQDRDSISMMLGEPLLRSSTARISTTSQLAIVGSNICPIESLDYEIIENDLFMQDWRSRRKIEIFQYVILKWALCLLIGLVTGLVGFFNNIAVENIAGRKLLLTNNLMLQEKYYLAFSVYVGSNIVLAFSAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRGGQCGLFGEGGLIMFNIHTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGSKVILVVSISLLTTCISFGLPWLSQCLPCPPNLEDECPTVGRSGNYKNFQCPPGQYNDLASLFFNTNDDVIRNLFTSATDKQFQLSSLFIFFTSIYFLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIIHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKKKTSIRSEILRSFKAYDFAKPGSGKGVKLEDLDINEEEMEMFVDLHPITNTSPYTVVETMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEYILGLYPYLNPHYKQGSSLITLPSVEFLFYGSKIHQLFSASIPFCWKF 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4607734 4615405 - CmaCh04G008860.1 Cma04g00886 291967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00886 866 ProSiteProfiles CBS domain profile. 765 826 IPR000644 -
Cma04g00886 866 SUPERFAMILY Clc chloride channel 125 640 IPR014743 -
Cma04g00886 866 CDD CBS_pair_voltage-gated_CLC_euk_bac 641 818 - -
Cma04g00886 866 PRINTS Plant CLC chloride channel signature 489 505 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g00886 866 PRINTS Plant CLC chloride channel signature 333 341 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g00886 866 PRINTS Plant CLC chloride channel signature 365 372 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g00886 866 PRINTS Plant CLC chloride channel signature 347 357 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g00886 866 PRINTS Plant CLC chloride channel signature 122 130 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g00886 866 Gene3D Clc chloride channel 140 639 - -
Cma04g00886 866 SUPERFAMILY CBS-domain pair 642 817 IPR046342 -
Cma04g00886 866 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 84 830 - -
Cma04g00886 866 PRINTS Chloride channel signature 248 267 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g00886 866 PRINTS Chloride channel signature 312 331 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g00886 866 PRINTS Chloride channel signature 625 639 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g00886 866 PRINTS Chloride channel signature 217 234 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g00886 866 PRINTS Chloride channel signature 569 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g00886 866 PRINTS Chloride channel signature 587 606 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g00886 866 PRINTS Chloride channel signature 537 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g00886 866 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 84 830 - -
Cma04g00886 866 MobiDBLite consensus disorder prediction 23 37 - -
Cma04g00886 866 Pfam Voltage gated chloride channel 205 619 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g00886 866 MobiDBLite consensus disorder prediction 44 71 - -
Cma04g00886 866 CDD ClC_6_like 117 638 - -
Cma04g00886 866 Pfam CBS domain 767 815 IPR000644 -
Cma04g00886 866 Gene3D - 664 802 IPR046342 -
Cma04g00886 866 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00886 Cma-Chr4:4607734 Cma15g00080 Cma-Chr15:374045 0 dispersed
Cma16g00762 Cma-Chr16:4173796 Cma04g00886 Cma-Chr4:4607734 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00886 K05016 - csv:101209987 1319.68