Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00892 ATGGCTCTGGTTCTGTACTCCTGGAACACTAACAAGAATGCTTACAAAGCTCTTATAGTTGCAGAATACAATGGTGTCAAGGTTGACCTTGCCCCAGGTTTTACCATGGGCGTAACCAATAAGTCTCCTGAGTTTCTCAAAATGAATCCTATTGGGAAGGTTCCTGTGCTTGAAACACCCGAAGGTGGTATCTTTGAGAGCAATGCCATAGCTCGCTATGTTGCTCGCTTGAAGGACTGTGGTTTGTTTGGTTCTTCTCCAATTGAATATGGACATGTTGAACAATGGATTGACTTTGCCACACTTGAAATTGATGTTCATATTGGTGCTTTAGCAGGGCCTAGATATGGATATCGTGCTTACCATGCTGCTGTTGAAGAAGCTGCAAACGCTGCCCTAAAGCGCTCTTTTGCTGCTCTGAACTCTTACCTTGCTTCAAACACATACCTTGTTGGACATTCTGTGACACTGGCTGATATCATTGTAACATGCAATTTGTATTGGGGAATCTCTTTTCTGTTGACTAAAAGCTTTACTTCTGAGTTCCCTCACGTCGAGAGGTACTTCTGGACAATGGTCAATCAACCAAATTTCAAGAAGATTATTGGTGAGTTTAAGCAGACAGAAACTGTTCCACCAGTGAAAACACCGGGAGAGGCTGCAGCAGCTGCCAAGCCAAAGCCTGAGCCTAAGAAGGAAGAAAAGCCCAAAGCAGCAGCACCTGCAGAGGAAGAGGATGCACCAAAGCCCAAGGCCAAGAATCCTCTTGACCTCCTTCCTCCCAGTAAGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACAAAAACTAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTACGATCCTGAAGGGTACTCCCTTTGGTTCTGTGATTACAAGTACAATGACGAGAACACAGTTTCCTTTGTGACTTTGAACAAAGTCAGCGGATTTCTCCAGAGAATGGATCTTGCTCGTAAATATGCCTTTGGAAAGATGCTTGTGATCGGATCAGAGGCACCCTTCAAGGTGAAGGGGCTATGGCTTTTCCGTGGGCAAGAAATCCCACAATTTGTCATGGACGAGTGCTATGACATGGAGCTGTACGAGTGGAAGAAGGTGGATATCTCTGATGAAGCCCAGAAGGAGAGAGTGAACCAAATGATTGAAGATCAGGAACCATTTGAGGGAGAGGCTCTCTTGGATGCCAAATGCTTCAAGAATTTTAATCAACCATCTTGGTTCTTCACTCTTCAGATAGACACAGAGATGAGCGGAAATTTGAGTCGCAGATCGTTTCATTTTATTTCGTTTTCGGCTTTGCTTTCTCTACTTTTCGTCTCCGCCCTTTCTGATGACTCCACTCCCAAAGATGGTATTAAATCTGGAAATCATCCATCCTCCAGAAGCAACACTAGCTCGATGATTGCAATCATCCTCCTTGGTCTTTTGGTAGTGGTGTTGTCATTTTTCCTTTTCAAGTTATGGCAAAAAAAGAGACGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGACGATGAGCTTGAAGTTGAGCTTGGTCTTCGGGATTGA 1596 44.17 MALVLYSWNTNKNAYKALIVAEYNGVKVDLAPGFTMGVTNKSPEFLKMNPIGKVPVLETPEGGIFESNAIARYVARLKDCGLFGSSPIEYGHVEQWIDFATLEIDVHIGALAGPRYGYRAYHAAVEEAANAALKRSFAALNSYLASNTYLVGHSVTLADIIVTCNLYWGISFLLTKSFTSEFPHVERYFWTMVNQPNFKKIIGEFKQTETVPPVKTPGEAAAAAKPKPEPKKEEKPKAAAPAEEEDAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVMDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFKNFNQPSWFFTLQIDTEMSGNLSRRSFHFISFSALLSLLFVSALSDDSTPKDGIKSGNHPSSRSNTSSMIAIILLGLLVVVLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4645427 4652681 + CmaCh04G008920.1 Cma04g00892 291973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00892 531 Pfam Glutathione S-transferase, C-terminal domain 122 196 IPR004046 -
Cma04g00892 531 SFLD Main (cytGST) 3 192 - -
Cma04g00892 531 PANTHER - 1 412 - -
Cma04g00892 531 Pfam Glutathione S-transferase, N-terminal domain 1 76 IPR004045 -
Cma04g00892 531 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Cma04g00892 531 SUPERFAMILY GST C-terminal domain-like 73 213 IPR036282 -
Cma04g00892 531 CDD GST_C_EF1Bgamma_like 89 211 - -
Cma04g00892 531 SUPERFAMILY Thioredoxin-like 2 77 IPR036249 -
Cma04g00892 531 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 412 IPR044628 GO:0004364
Cma04g00892 531 MobiDBLite consensus disorder prediction 225 252 - -
Cma04g00892 531 MobiDBLite consensus disorder prediction 211 254 - -
Cma04g00892 531 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 252 412 IPR036433 GO:0003746|GO:0006414
Cma04g00892 531 Gene3D - 80 213 - -
Cma04g00892 531 CDD GST_N_EF1Bgamma 3 77 - -
Cma04g00892 531 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 252 412 IPR001662 GO:0003746|GO:0006414
Cma04g00892 531 Gene3D Glutaredoxin 1 74 - -
Cma04g00892 531 SFLD Glutathione Transferase (cytosolic) 3 192 IPR040079 -
Cma04g00892 531 SMART EF1G_2 251 359 IPR001662 GO:0003746|GO:0006414
Cma04g00892 531 Pfam Elongation factor 1 gamma, conserved domain 251 359 IPR001662 GO:0003746|GO:0006414
Cma04g00892 531 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cma04g00892 531 SUPERFAMILY eEF1-gamma domain 253 412 IPR036433 GO:0003746|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00838 Cma-Chr1:4590681 Cma04g00892 Cma-Chr4:4645427 3.65E-14 dispersed
Cma04g00892 Cma-Chr4:4645427 Cma04g01937 Cma-Chr4:10560539 0 dispersed
Cma16g00767 Cma-Chr16:4206363 Cma04g00892 Cma-Chr4:4645427 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00892 K03233 - csv:101215571 675.241