Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00900 ATGTTACCAACTCTTCATTATCTTAGCTCTGCCCAAACATACTTGAGGAAGTTCATCATATTATTCCACTGTCTTGTCCTCCTCACTTCGCCGAAAAATTCATTATTGCAAAGCTGCTTAAAACCCCTGCTGCTGCTGCTCTTTCCTTCCCGTGCTTCCAAACTCAATTCCCTTGAAACAATTTTGGGAAAAAACATGTTGTTTTTCCTTGTTTTTACTTTCTTCTCTCTTCTAGGGCCCTCTTCTTCCCACAGTCTGGTCAGTGATTTCCATGTCTTGCTTGCTCTGAAACAAGGGTTTCAATTCTCGGACTCTGCTGTGCTAAGCACATGGACTGCGTCAAACTTTAGCTCCGTTTGTTCGTGGGTCGGGATTCAGTGCTCTGACAAACGAGTTGTGTCGGTTGACTTGACAGATTTGAGCCTTGGAGGCTCTGTTTCACCGTTTATTTCTAGTCTTGATCAACTTTCTCAGTTGTCTGTGGCTGGAAATAACTTCTCCGGTAGCATTGAAGTAGTGAATTTGAGTTACCTCCGATTCCTTAACATCTCAAACAACCAGTTTACTGGGACTCTGGACTGGAACTTTTCGAGTCTGCCAAACTTAGAAGTGTTCGATGCTTATAACAACAACTTCACTGCTGTGCTCCCCACTGAGATTTTGAACTTACAGAACCTCAAGTACTTGGACCTTGGAGGTAACTTTTTCCATGGAACAATCCCTGAAAGCTATGGCAATTTCGAAGGATTGCAATATCTTTCTCTTGCAGGAAATGATTTGGTCGGGAAAATCCCAGGTGAGTTGGGAAATCTTACAAATTTGAGAGAAATTTACTTGGGTCATTACAATGTTTTCGAAGGTGGCATTCCACCCGAGCTCGGGAAGTTGGAGAATTTGGTTATTATGGAGATTACAGACTGCGGTTTGGACGGTCAAATTCCTCATGAACTCGGAAATTTGAAGGCCTTGAATACTCTATATTTGCATACGAATCTACTCTCAGGTTCAATCCCGAAGCAGTTAGGCAATTTGACAAACTTGGTCTTTCTCGATCTATCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGATCTCAAACAGCTCAAGCTTTTCAACCTCTTCATGAACAAACTACACGGATCTATTCCAGATTACGTAGCAGATTTGCCGAACTTGGAGAGCTTGGCCCTGTGGATGAACAACTTCACCGGCACAATCCCAAAGAATCTCGGCCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCAACGAACAAGCTCACGGGTACAATCCCTCAGGATTTGTGTTCATCGAACCAGCTGAAAATATTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGATGGCTTGGGGACATGTACCAGTCTAACAAAAGTGAGGTTGGGGCAGAACTATCTGAACGGAAGCATTCCTAATGGCTTCATTTACTTGCCTCAGCTAAATCTAGCAGAGTTTCAGGACAATTACCTTTCAGATACACTTTCAGAGAATTGGAATAGTTCATCAAAACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCTGGAACTTTACCATTTTCATTTTCTAATTTCTCGTCTCTCCAAATTCTCCTCCTTGATGGCAATCAGTTTTATGGTACAATCCCTCCTTCCATCGGGGAACTCAGTGAACTTCTGAAGCTCGATCTTAGCAGAAACTCACTTTCAGGTGAAATTCCACCTGAAATTGGGAATTGTATCCATCTCACTTACCTTGATTTGAGCAAGAACAACCTCACTGGCCCAATTCCACCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAATCAATCCCTACCGAAATCAATAGGGGCCATGAAGAGCCTCACGATTGCAGATTTTTCCTTCAATGATTTCTCCGGAAAGCTACCGGAATCAGGACAACTTGCCTTCTTCAATGCTTCGTCTTTCGCCGGAAATCCTCAACTCTGCGGATCTCTCCTCAACAATCCCTGCAACTTCGCAACAACGGCAACAAAATCGAGAAAAACTCCTGGGTATTTCAAGCTAATCTTCGCCCTTGGCCTACTGATTTGCTCCCTAGTGTTTGCCATAGCCGCAATAGTCAAAGCAAGATCGTTTAAAAGAAACGGCTCAAGTTCGTGGAAAATGACCTCATTCCAAAAGCTCGATTTCACCGTCTACGACGTTTTAGAGTGCGTGAAAGATGGAAACGTGATCGGAAGAGGCGGCGCCGGCATCGTCTACCACGGAAAAATGCCGAATGGAGTTGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGTCCCAACAGTCACGACCACGGATTCCGAGCCGAAATCCAAACCCTAGGCAATATTCGACACCGGAACATCGTCAGATTATTCGCTTTCTGCTCCAATAAAGAGACAAATCTCCTCGTATACGAATACATGAGGAACGGAAGCTTAGGCGAAGCACTCCACGGAAAAAAAGCCTCGTTCCTCGGATGGAATTTGAGGTACAAAATCGCCATTCAAGCCGCTCAAGGTCTCTGCTATCTCCACCACGATTGTTCTCCACTAATCGTCCACCGAGACGTGAAATCGAACAACATTCTCTTGAATTCGAACTTCGAAGCTCACGTCGCCGATTTCGGACTGGCGAAGTTCATGTTCGATGGCGGCGCATCGGAATGCATGTCGGTTATCGCCGGGTCTTACGGCTACATCGCTCCTGAATATGCATACACCTTAAGAGTGGATGAAAAAAGTGATGTGTACAGTTTTGGAGTAGTGCTATTGGAGCTTTTGACGGGACATCGTCCAGTTGGAGATTTTGGAGACGGAGTGGTTGACATAGTACAATGGTGCAAAAGAACTCTAGAAAACGGAGAGAGCGAAAATGACATTCTTGACATAGTCGACAAAAGGATAGGGACAGTGCCCAAAGAGGAAGCAAAACACTTATTCTTCGTAGCAATGTTGTGTGTGCAAGAAAACAGCGTGGAGAGACCAACTATGAGAGAAGTGGTTCAAATGCTGGCTGAATTTTCTCACCAATCTCCGGAATGTAACAAATCTTCGAGTTCTTCTCCTTATCAAAGTCTAACCAAGCTCAATCGACGCACTGCTAACAGGTTAGGAACAAGTTTTCTTCTCCGACAACGTGGGTTCTGGTCTCGCTCTAGCCACTCTTCCTTCTACAACACTAAGCGTCTTGCCCTCTCCGCGCGCTCAACCGCTGCCTTAAATCGACTCACATCCTTCTCTTCTTCAAAGATAACCTCGAAACTATGCGGGTCGGCGCTGTCTTCCGCGGGAGATCCATACCTTGATTTTGTTGTTCAAAGAGAGAAAAATCTCAGACAAGTAATCTCCCTCAAGAATCTAATAGTTTCGAGTCCTTTTAAATCTGTCCCACTTTCCTCTGTCTCTTTGATGAGACAGAACCTCAAAGCCCCCACTACTTCGATCTCCAAGTTCTTCCAATTGTACCCTTCTGTTTTCATCCAATTCCAGCCTAGTCTTGGCCTCCATCCTCATGTCAAGCTCACCTCCCAATCTCTAGCTCTCCACAAGGAAGAATTAACCATTCATAACTCTCAACCACATAGAGACGACATTGTGAAGCGGTTAGCGAAACTATTGATGCTCACAGGGGCTGGGAAATTGCCCCTATATGTCATTGAGAAGCTGCAATGGGATTTGGGTCTACCCTACAAGTTCATTCCAGCTCTTCTTGCTGATTATCCTGAATATTTTCAGGTTTGTAGTATGAGAGATTGTTCAACAGGTGAACAAACTCTTGCATTGGAACTACTTTCTTGGAGGGAAGACCTTTCAGTCTCAGAACTGAAGAAGAGGCATTCCTTGGAAGGCAATGGTTGGAGAAGGAATGGAAATCACATTGCATTTCCAATGAGTTTTCCTAGGGGTTTTGATTTGGAGAAGAAGGTGCTGAATTGGGTGGAGGAGTGGCAGCGTCTGCCTTACATTTCACCCTACGAAAATGCATTCCATCTAGCACCAAACAGCGACCAGGCTGAGAAATGGACCACGGCAGTTCTTCACGAGTTGCTTTACCTTATGGTCTCAAAGAAAACCGAAAAAGAGAACATCTTCTGCTTGGGAGAGTATTTGGGGTTCGGTTCTAGGTTCAAGAAGGCCATAGTTCATCACCCAGGTATATTTTACGTCTCAAACAAGATTAGAACACAAACTGTGGTTCTCAGAGAGGCGTATAACAAGAACTTTCTGGTAGAAAAGCACCTTTTGATGGGCATGAGGCATCAGTACATTCACCTAATGAACAAAGCTGTAAGGAGACCTAGACCACGCATCATATTAGCTTCTTCCAGAGGTAAAAGACAGAATAATCCATCTGCCAACAAAGAACCTAAGAGAAATGCTAAAGCAAAGCTGGAAGAATCCAATGTGTATTTTCAGCCATCGGTTGAGGAAGACGATCGTCCGTGCAGAGTGACTGAGTTGCAAAATAATGCATTTCATGAATGA 4542 44.12 MLPTLHYLSSAQTYLRKFIILFHCLVLLTSPKNSLLQSCLKPLLLLLFPSRASKLNSLETILGKNMLFFLVFTFFSLLGPSSSHSLVSDFHVLLALKQGFQFSDSAVLSTWTASNFSSVCSWVGIQCSDKRVVSVDLTDLSLGGSVSPFISSLDQLSQLSVAGNNFSGSIEVVNLSYLRFLNISNNQFTGTLDWNFSSLPNLEVFDAYNNNFTAVLPTEILNLQNLKYLDLGGNFFHGTIPESYGNFEGLQYLSLAGNDLVGKIPGELGNLTNLREIYLGHYNVFEGGIPPELGKLENLVIMEITDCGLDGQIPHELGNLKALNTLYLHTNLLSGSIPKQLGNLTNLVFLDLSNNALTGEIPSEFVDLKQLKLFNLFMNKLHGSIPDYVADLPNLESLALWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPQDLCSSNQLKILILMNNFLFGPIPDGLGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSDTLSENWNSSSKPIKLGQLNLSNNLLSGTLPFSFSNFSSLQILLLDGNQFYGTIPPSIGELSELLKLDLSRNSLSGEIPPEIGNCIHLTYLDLSKNNLTGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTATKSRKTPGYFKLIFALGLLICSLVFAIAAIVKARSFKRNGSSSWKMTSFQKLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLFAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIQAAQGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGHRPVGDFGDGVVDIVQWCKRTLENGESENDILDIVDKRIGTVPKEEAKHLFFVAMLCVQENSVERPTMREVVQMLAEFSHQSPECNKSSSSSPYQSLTKLNRRTANRLGTSFLLRQRGFWSRSSHSSFYNTKRLALSARSTAALNRLTSFSSSKITSKLCGSALSSAGDPYLDFVVQREKNLRQVISLKNLIVSSPFKSVPLSSVSLMRQNLKAPTTSISKFFQLYPSVFIQFQPSLGLHPHVKLTSQSLALHKEELTIHNSQPHRDDIVKRLAKLLMLTGAGKLPLYVIEKLQWDLGLPYKFIPALLADYPEYFQVCSMRDCSTGEQTLALELLSWREDLSVSELKKRHSLEGNGWRRNGNHIAFPMSFPRGFDLEKKVLNWVEEWQRLPYISPYENAFHLAPNSDQAEKWTTAVLHELLYLMVSKKTEKENIFCLGEYLGFGSRFKKAIVHHPGIFYVSNKIRTQTVVLREAYNKNFLVEKHLLMGMRHQYIHLMNKAVRRPRPRIILASSRGKRQNNPSANKEPKRNAKAKLEESNVYFQPSVEEDDRPCRVTELQNNAFHE 1513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4686817 4693662 + CmaCh04G009000.1 Cma04g00900 291981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00900 1513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 871 883 IPR008271 GO:0004672|GO:0006468
Cma04g00900 1513 SUPERFAMILY RNI-like 134 454 - -
Cma04g00900 1513 Pfam Protein tyrosine and serine/threonine kinase 753 1023 IPR001245 GO:0004672|GO:0006468
Cma04g00900 1513 Gene3D Phosphorylase Kinase; domain 1 716 826 - -
Cma04g00900 1513 MobiDBLite consensus disorder prediction 1458 1487 - -
Cma04g00900 1513 Gene3D Ribonuclease Inhibitor 194 285 IPR032675 -
Cma04g00900 1513 Pfam Leucine rich repeat N-terminal domain 88 128 IPR013210 -
Cma04g00900 1513 Gene3D Transferase(Phosphotransferase) domain 1 827 1047 - -
Cma04g00900 1513 Gene3D Ribonuclease Inhibitor 390 684 IPR032675 -
Cma04g00900 1513 PANTHER UNNAMED PRODUCT 67 1032 - -
Cma04g00900 1513 ProSiteProfiles Protein kinase domain profile. 750 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00900 1513 SUPERFAMILY L domain-like 418 674 - -
Cma04g00900 1513 MobiDBLite consensus disorder prediction 1469 1483 - -
Cma04g00900 1513 SMART LRR_typ_2 392 416 IPR003591 -
Cma04g00900 1513 SMART LRR_typ_2 417 440 IPR003591 -
Cma04g00900 1513 SMART LRR_typ_2 344 368 IPR003591 -
Cma04g00900 1513 SMART LRR_typ_2 199 223 IPR003591 -
Cma04g00900 1513 SMART LRR_typ_2 563 587 IPR003591 -
Cma04g00900 1513 SUPERFAMILY Protein kinase-like (PK-like) 734 1023 IPR011009 -
Cma04g00900 1513 SMART serkin_6 750 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00900 1513 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 67 1032 - -
Cma04g00900 1513 Pfam Leucine rich repeat 225 281 IPR001611 GO:0005515
Cma04g00900 1513 Gene3D Ribonuclease Inhibitor 88 193 IPR032675 -
Cma04g00900 1513 Gene3D Ribonuclease Inhibitor 286 389 IPR032675 -
Cma04g00900 1513 Pfam Plant organelle RNA recognition domain 1117 1448 IPR021099 GO:0003723
Cma04g00900 1513 Pfam Leucine Rich Repeat 178 199 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00349 Cma-Chr4:1699886 Cma04g00900 Cma-Chr4:4686817 0 dispersed
Cma04g00900 Cma-Chr4:4686817 Cma07g00607 Cma-Chr7:2629596 0 dispersed
Cma16g00202 Cma-Chr16:912682 Cma04g00900 Cma-Chr4:4686817 0 dispersed
Cma20g01007 Cma-Chr20:6446245 Cma04g00900 Cma-Chr4:4686817 3.79E-30 dispersed
Cma06g00041 Cma-Chr6:238510 Cma04g00900 Cma-Chr4:4686817 6.38E-34 transposed
Cma07g00002 Cma-Chr7:17720 Cma04g00900 Cma-Chr4:4686817 0 transposed
Cma10g00985 Cma-Chr10:5106166 Cma04g00900 Cma-Chr4:4686817 4.89E-34 transposed
Cma14g01484 Cma-Chr14:11272602 Cma04g00900 Cma-Chr4:4686817 2.22E-24 transposed
Cma17g00585 Cma-Chr17:4833982 Cma04g00900 Cma-Chr4:4686817 1.01E-67 transposed
Cma18g00901 Cma-Chr18:7767221 Cma04g00900 Cma-Chr4:4686817 9.17E-51 transposed
Cma19g00337 Cma-Chr19:3464887 Cma04g00900 Cma-Chr4:4686817 8.08E-29 transposed
Cma19g01080 Cma-Chr19:9004320 Cma04g00900 Cma-Chr4:4686817 3.60E-97 transposed
Cma16g00776 Cma-Chr16:4268101 Cma04g00900 Cma-Chr4:4686817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68487 PF11955 PORR 2.60E-106 No_clan Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00900 - - csv:101215633 1763.81