Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00902 ATGAGGCTTGACCTCGGAAACCATCCAACTTTGGCACTTATGTGGCCGTGTTCTCACATTACTATTCACAAAAGTTGGTTTGTCCAGGATCTTCGGCGTGCGGGGTTCGAAAGCTTTCAGGATTTCATTGCCTTTTCCTTAAGACTGCATTCCTTGAGAAATTGTGACATGGGTGGGCTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGCAGTGGTTAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCGTAAGTGTCTTCGTGCAGAGGGGTTCAACGTCTGA 393 45.04 MRLDLGNHPTLALMWPCSHITIHKSWFVQDLRRAGFESFQDFIAFSLRLHSLRNCDMGGLPVGNSSESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4698330 4702294 + CmaCh04G009020.1 Cma04g00902 291983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00902 130 Gene3D CytochromE C oxidase copper chaperone 67 130 - -
Cma04g00902 130 PANTHER CYTOCHROME C OXIDASE COPPER CHAPERONE 69 130 - -
Cma04g00902 130 MobiDBLite consensus disorder prediction 65 86 - -
Cma04g00902 130 SUPERFAMILY Cysteine alpha-hairpin motif 79 130 IPR009069 -
Cma04g00902 130 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 90 130 - -
Cma04g00902 130 Pfam Cytochrome C oxidase copper chaperone (COX17) 86 130 IPR007745 GO:0005507|GO:0005758|GO:0016531
Cma04g00902 130 PANTHER CYTOCHROME C OXIDASE COPPER CHAPERONE 69 130 IPR007745 GO:0005507|GO:0005758|GO:0016531
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00902 K02260 COX17; cytochrome c oxidase assembly protein subunit 17 - csv:101205238 143.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g224 . . . . . . Bma10g00501 Bma13g00957 . Cmo04g00969 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1065 . . Csa03g00632 . . . . Bda05g00769 . . Bpe03g00835 . . . . . Cma04g00902 . . . . . Bhi11g00775 Tan01g1556 . . . . . . . . . . . . . . Chy06g01694 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005211 3 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00902 Cma_Chr04 FPKM 7.518875 9.413218 14.229306 12.881026 5.905974 4.395448 5.603037 12.20233 13.370206 13.202095