Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00906 ATGGCTACGGTTCTCGGTTCCCTCGCTCTTCCCTCTTCCTCCGTCTTGGCTTCCACCACCTTCTCCGGCCGTCGGACCTCCCTCGTGCTTCCGCGCTACAGAGCATTGAAGATCGGACACAGCTTCACTTCCCATTCTGTAAAATCTGCGAGATCGAATGCCAGATTTACTCATCGTTCTGACAGAGTCGTCTGCGACGGTCAGGAAACTTCTTCCATAGTACCTTCTGCTTCAGAAGCTACTTGGCAGTCACAGGTTATTGAATCTCGTGTACCGGTTCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGGTTGTTGATGAACTATCCAAGGAGTATGCAGGAAAGTTTAAATTTTACAAGGTAAATACTGATCAGGAAGCTGAGATTGCATCCCGATATGCTATCAGAAGCGTCCCCACTGTCATTATCTTCAAAAATGGTGAGAAGAAGGAGGCAATAATTGGTGCAGTTACCAAAACAACTCTGACTGACAGCATGGACAAATTCTTGTAG 534 47.57 MATVLGSLALPSSSVLASTTFSGRRTSLVLPRYRALKIGHSFTSHSVKSARSNARFTHRSDRVVCDGQETSSIVPSASEATWQSQVIESRVPVLVEFWAPWCGPCRMIHPVVDELSKEYAGKFKFYKVNTDQEAEIASRYAIRSVPTVIIFKNGEKKEAIIGAVTKTTLTDSMDKFL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4711490 4714195 + CmaCh04G009060.1 Cma04g00906 291987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00906 177 ProSiteProfiles Thioredoxin domain profile. 68 177 IPR013766 -
Cma04g00906 177 TIGRFAM thioredoxin: thioredoxin 78 176 IPR005746 GO:0015035
Cma04g00906 177 Gene3D Glutaredoxin 74 177 - -
Cma04g00906 177 PANTHER GEO12009P1 9 177 - -
Cma04g00906 177 PANTHER THIOREDOXIN-1-LIKE 9 177 - -
Cma04g00906 177 CDD TRX_family 80 174 - -
Cma04g00906 177 Pfam Thioredoxin 77 174 IPR013766 -
Cma04g00906 177 PRINTS Thioredoxin family signature 93 101 - -
Cma04g00906 177 PRINTS Thioredoxin family signature 101 110 - -
Cma04g00906 177 PRINTS Thioredoxin family signature 141 152 - -
Cma04g00906 177 ProSitePatterns Thioredoxin family active site. 94 112 IPR017937 -
Cma04g00906 177 SUPERFAMILY Thioredoxin-like 74 176 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00906 K03671 trxA; thioredoxin 1 - csv:101204508 263.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00906 Cma16g00782 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00906 Cma-Chr4:4711490 Cma04g02416 Cma-Chr4:16678893 8.08E-45 dispersed
Cma12g00123 Cma-Chr12:507418 Cma04g00906 Cma-Chr4:4711490 5.96E-13 transposed
Cma16g00782 Cma-Chr16:4299753 Cma04g00906 Cma-Chr4:4711490 3.41E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00906 Cma_Chr04 FPKM 7.221814 7.501867 35.150726 38.48959 8.729203 9.314396 8.845645 19.868856 20.302374 21.235723