Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00907 ATGGTAGCCATGATTTATGGGAATGGTGGGTTTGTTTGGGTTTTGTATGCGTTGTTTTTCATGCTGGTTGGTGGGTCCTTCGTCCATGGGGACGGTGGTGCTTGGCTTGATGCTCATGCAACATTCTATGGAGCTGATCAAAACCCTACTAGCCTTGGAGGAGCATGTGGTTACGACAATACATTTCATGCCGGATTTGGAATAAACACGGCGGCGGTGAGCGGCGCACTTTTCAGAGGAGGAGAGGCTTGCGGCGCTTGCTTCCTAGTAATTTGCAACTACAACGTGGACCCCAAGTGGTGCCTCCGCCGCCGCGCCGTCGCCATCACCGCCACAAACTTCTGTCCCTCCAATAACAACGGGGGCTGGTGCGACCCCCCTCGCGCGCACTTCGACATGTCGTCACCTGCCTTTCTTACCATTGCTCGCCAAGGCAACGAAGGGATCGTCCCTGTCCTTTACAAGAGGGTAAGTTGTAGAAGGAAGGGAGGAGTTCGATTCACATTGAGAGGACAATCAAACTTCAATATGGTGATGATATCGAACGTCGGTGGCAGCGGCGACGTCAAGGCTGCATGGGTTAAGGGGTCGAGGACGAGGACGTGGATGCCCATGCATCGTAATTGGGGTGCAAACTGGCAGGCCAATGTCGACCTTCGAAACCAAAGAATGTCGTTTAAGGTTACTCTAATAGATGGGAGGACATTGGAGTTTGTCAATGTGGTGGCGCTCAAAACTGTCGAAACTCGGTTTTTTTTCCTGAAATTGGAGGTTTCCGGAGGTCCGGCCTTGGCGGCGGCATTGGCAATGTTCAAAATCTTGAGGAGCTTTTCTTCAGGTTTCACGAGAACGGCAAGAACGGAGACAGATGCATTCTGTTTTGTAGCGTTGAGATTATACAGCGCGAGACGAACCTGCAACCGAAGAAACCTCTTCGCCAGGATCAGTCCTCTCGGTTCTCCTGAGCTTAGTGTAGTTCCGATTCTTGATCAGTGGATTCAGGAAGGCAGGATGATCAAGGACTTTGAGCTGCGGAGAATCGTTCGCGACCTTCGTAATTGCCGGCGGTATGGCCAAGCCCTTGAGGTGTCTGAATGGATGCGTAGCAAGGGACTTTTTTCCTTTACAACTAGAGACTTTGCTGTACAGCTTGATCTAATCGGCCGAGTTCAGGGGCTCGATTCCGCAGAGAAGTATTTCAGCAGTGTTTCTAACCAAGAGGAAATGGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTGTAGATAAGGCCCTTTCCCATATGCAGAAGATGAAAGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAACACTGGCCAGGTCGATAAAGTTCCGAATGTACTTTCTGAAATGAAGGAGAATGGTGTTCTTCCTGACAATTATAGCTATAGAATTTGCATCAGTTCTTATGGAGCTAGGTCTGATCTAATCGGTATGCTGAAGGTTTTGAAAGAAATGGAGAGTCAAACTCACATATCTATGGACTGGACTACTTATTCAATGGTTGCCAATTTTTTCATAAAGGCTGGTATGCACGAGAAAGCAATGAGTTACCTTCGGAAATGCGAGGACAAGGTCAATCAAGACGCTCTCGGCTTCAATCATCTCATTTCACTTTACACCAGTCTGGGATGTAAAGACGAAGTAATGAGACTGTGGGCTCTCCAAAAGAAGTGCAAGAAGCAAGTCAATAGGGATTATATAACCATGTTGGGTTGTTTGGTTAAGCTTGAGTTTCTTGAGGAAGCTGAGAAATTGGTCAAGGAATGGGTGTCATCTTGCGAGTGTTATGATTTTCGGGTTCCGAATGTTCTTCTCATCGGATACTCGAAAAGGGGGCTAATTGAAAGAGCTGAAAAGATGCTCCAAAACATCATCAGTGACGGGAGGATCCCACCACCAAATAGTTGGGGCATTATTGCAGCAGGGTACTTGGAAAAGCAGAACCTGGAGAAAGCTTTCAAGTGCATGAAGGAAGCTGTGGCTGTACAAGAGCAAAACAAAGGGTGGAGGCCCAAACCTAGCGTCTTATCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAGGAGCTGAAAGAGTTTCTGAGCTCATTGAAGACTGTTCCTTCCATGGACGGAAAACTAAGTAATGCCTTCGATGAGCTTCTGGAAACCTTAAAAAACAATGATGAAACAACGGCCGATGCTCTTAAGGAATCACAACCTTGTTTAGCTCAGCTAGATTAA 2292 46.99 MVAMIYGNGGFVWVLYALFFMLVGGSFVHGDGGAWLDAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGALFRGGEACGACFLVICNYNVDPKWCLRRRAVAITATNFCPSNNNGGWCDPPRAHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVKGSRTRTWMPMHRNWGANWQANVDLRNQRMSFKVTLIDGRTLEFVNVVALKTVETRFFFLKLEVSGGPALAAALAMFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFELRRIVRDLRNCRRYGQALEVSEWMRSKGLFSFTTRDFAVQLDLIGRVQGLDSAEKYFSSVSNQEEMGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYNDIMCLYLNTGQVDKVPNVLSEMKENGVLPDNYSYRICISSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGCKDEVMRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVKEWVSSCECYDFRVPNVLLIGYSKRGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNLEKAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTADALKESQPCLAQLD 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4716319 4720443 + CmaCh04G009070.1 Cma04g00907 291988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00907 763 TIGRFAM PPR: pentatricopeptide repeat domain 447 479 IPR002885 -
Cma04g00907 763 TIGRFAM PPR: pentatricopeptide repeat domain 412 441 IPR002885 -
Cma04g00907 763 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Cma04g00907 763 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cma04g00907 763 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Cma04g00907 763 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Cma04g00907 763 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cma04g00907 763 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cma04g00907 763 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Cma04g00907 763 PANTHER OS12G0527900 PROTEIN 296 737 - -
Cma04g00907 763 SMART dpbb_1 70 154 IPR007112 -
Cma04g00907 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Cma04g00907 763 Gene3D Tetratricopeptide repeat domain 372 492 IPR011990 GO:0005515
Cma04g00907 763 Gene3D Tetratricopeptide repeat domain 493 575 IPR011990 GO:0005515
Cma04g00907 763 SUPERFAMILY Barwin-like endoglucanases 15 182 IPR036908 -
Cma04g00907 763 Pfam PPR repeat 587 612 IPR002885 -
Cma04g00907 763 Pfam PPR repeat 413 441 IPR002885 -
Cma04g00907 763 Pfam PPR repeat 518 542 IPR002885 -
Cma04g00907 763 Pfam PPR repeat 623 649 IPR002885 -
Cma04g00907 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Cma04g00907 763 Pfam PPR repeat family 447 489 IPR002885 -
Cma04g00907 763 Gene3D Tetratricopeptide repeat domain 584 757 IPR011990 GO:0005515
Cma04g00907 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Cma04g00907 763 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 296 737 - -
Cma04g00907 763 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 242 IPR007117 -
Cma04g00907 763 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 164 IPR007112 -
Cma04g00907 763 Gene3D - 164 248 IPR036749 -
Cma04g00907 763 Coils Coil 667 687 - -
Cma04g00907 763 Pfam Lytic transglycolase 70 154 IPR009009 -
Cma04g00907 763 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cma04g00907 763 SUPERFAMILY TPR-like 418 689 IPR011990 GO:0005515
Cma04g00907 763 Gene3D - 25 160 IPR036908 -
Cma04g00907 763 SUPERFAMILY PHL pollen allergen 161 242 IPR036749 -
Cma04g00907 763 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Cma04g00907 763 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Cma04g00907 763 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cma04g00907 763 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Cma04g00907 763 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00907 Cma-Chr4:4716319 Cma11g01873 Cma-Chr11:12432949 6.33E-103 dispersed
Cma04g00907 Cma-Chr4:4716319 Cma18g00365 Cma-Chr18:1990198 5.86E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00907 - - cmos:111447235 997.653