Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00908 ATGGCCAGAGATCGAAATGGTGAGCTATCTAATAAGAGAGGAAGTTCCGACAACGACGAGGACAGCGGAGGAGGAGTAGGAGGAGTAGGTGGAGAAGACAACGAGGCTCCTTCGAAGAGAAATTCTGGCAGGAGTTCCGATGTGGAAGAAGGGCGAAAACGCAGCAAATCAAGAAGAAAATCGCGGGACAGTTCGGATTCCGACGAAAAACATGACAGGAAACGCGGGAAGAGTTTGATAAGAAAGGGCAAGTCCCGCAGACGATACAGTAGTAGTGAGGAGGATTCTGATTCCGAGGATGCGGAATCTGAAAGCTCGGAGTCTGATTCGGATTCGGAGCACTCCGACGCGGAATCAGCGTCTAATAGTTCGGGTTCGGAAGGCGAGAGCGAGGAGGAGAGGAGGAGGAGGAAGAGGAAGGAAAAGAGGAGAAGAAGAGAAAAGGAGGAGAGAGAGCGGAAGAGGAGGAGAAAAGAGAAGGAGAAGAAGAGAAGGAGAAAAGAGAAGGAGGAAGAGAAACGAAGGAAGGAAAAGAAAAAGAAGGAGAAGAAGGAACGGGGAAAGAAGGGGGCTGTGACGAATTCGTGGGGAAAATACGGGATTATCAAAGAAACTGATATGTGGAACAAGCGACCAGAGTTCACTGCATGGCTGGCTGAAATTAAAAAGGTGAACTTGGAAAGTCTAGCTAATTGGGAAGAGAAGCAGATGTTTAAGGAATTCATGGAGGACCATAACACGGCCACTTTCCCATCTAAAAAGTACTACAATCTTGATGCCTATTACCAGCATAAAATGCTAAAAGATATGAAGAAAGGCCACAAAAAGATTTTGGCTGGGGAACGCACAGTGTTTGATGATGAAGAACAGAGGAGGCAAGAACTACTCGTGGAACGTGAAAAACACAAGGAAGAACAAGTGGAAGCCTTAAAGCGCTCGATGCAGACTGGAATGGCACAAGCAATGAAAGAACAAGCTCGACTCAGGGAGGAGATGGCTTACCAGTATAAGCTTGGAAACTTTGAGGCTGCAGCTGCCATCCAGCGAAGATTGGACCCAGATGTTGCCCTTTTGCGGGGAAGATCTGTTCAGTGCGAAAAGCACAATACAGAACAACAAGTTAAAGCTTCTCACTCGAAGAGCAGCACAAGCCTGTTAAAGAAAGATATGGGAGGCAGAGGAGTTATTGGTCATAAATGGTTCATGAGGGTTCTTTGGGTCTGTGCCCTCGGTAGTGCGATCGGTTTGTATATGGTTGCTCAAGAAAGACAATTACAGAACAGGCAAAGAATGTTGGCTGAGAGTTTGAAAGATGTGGAATCAGGAGGCTGTGGGGAAAGTGTTTAG 1347 46.84 MARDRNGELSNKRGSSDNDEDSGGGVGGVGGEDNEAPSKRNSGRSSDVEEGRKRSKSRRKSRDSSDSDEKHDRKRGKSLIRKGKSRRRYSSSEEDSDSEDAESESSESDSDSEHSDAESASNSSGSEGESEEERRRRKRKEKRRRREKEERERKRRRKEKEKKRRRKEKEEEKRRKEKKKKEKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVALLRGRSVQCEKHNTEQQVKASHSKSSTSLLKKDMGGRGVIGHKWFMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDVESGGCGESV 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4720988 4726019 + CmaCh04G009080.1 Cma04g00908 291989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00908 448 MobiDBLite consensus disorder prediction 1 19 - -
Cma04g00908 448 PANTHER NUCLEIC ACID-BINDING PROTEIN 1 356 - -
Cma04g00908 448 Coils Coil 130 187 - -
Cma04g00908 448 MobiDBLite consensus disorder prediction 1 191 - -
Cma04g00908 448 MobiDBLite consensus disorder prediction 164 178 - -
Cma04g00908 448 Coils Coil 285 312 - -
Cma04g00908 448 MobiDBLite consensus disorder prediction 37 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00908 - - - csv:101203775 336.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00785 Cma-Chr16:4308287 Cma04g00908 Cma-Chr4:4720988 1.55E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002999 3 1 2 3 1 1 1 1 1 2 1 1 1 2 1 2 1 1 1 1 2 2 1 1 3 1 2 2 2 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00908 Cma_Chr04 FPKM 14.394751 14.052267 17.757126 18.52812 17.431026 15.377942 15.061246 37.02895 37.689056 38.953381