Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00922 ATGCCTACAGTCTGGCTGTCCTTGAAGAAATCTCTGCACTGCAAATCAGGGCCATCCGAAGTTCATGACCCAAAAAGCAGAAGAAATCTAGGCGCCATTTTGACAAGAAAAACAGGGGGAGGAAGATCGGGTTGTTCCAGGTCCATTGCAAATCTCAAAGATGTCATCCATGGCGGCAGCAAGAGGCATTTGGATAAGCCCCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGTGAGTTTCTCAACCCAATAACCCATGAAGTCATTCTCACTAACTCAAGGTGCGAGCTCAAAATCACCGGATTTCACGGCGCTTTCCCACCCGATGTGCCTGCCTCCACCGATGAACCCCTCACAGATCGTCCCGCCGCCTCCACTTTTGTGGGTACTCTGACACCGGGTACGCCGGGCCCCGGTGGCCACCCCACAATGCATTACTTCGATCCTTCCTTTAGGTCTTCTTCAAGAAAGTTCCCTTTTAGAGAGGGATTTGGAAGCTCTAATAAATCTTGCGGCGGCGGCGGTGGAGCTCGCAGCCTCGGTGGTGGAGGTGGAGGTGGAGTCCATACGTGTAACAGAATCTCATTGGAGACAGAGATTGATGGGAATAGATCTTCTTCTGCGGTCACTTGTCATAAATGTGGAGAGCAGTTCAACAAATGGGATGCTGCTGAAGCTCATCATCTTTCTAAACATGCTGTAACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATTGTGGAGATCATATGCAGGACAAGCTGGTTAAAGTCTGAAAATCAATCTGGTAGGATTGAAAGAGTACTCAAAGTTCACAATATGCAAAGAACGCTAGCCCGGTTTGAGGAGCATCGTGAGACTGTTAAGATCAAAGCCAGCAAGCTCCCAAAGAAGCACCCTCGGTGCCTTGCCGATGGAAACGAGCTGCTGCGATTCTTCGGCACAACAGTCGCGTGCTCCCTCGGCTTGAATGGTTCCTCCAGCCTCTGCATATCGGAGAAGTGCTGCGTATGCAGGATCATACGCAACGGATTCTCGGCAAAGACAGAGATGAAAGAAGGGATAGGCGTGTTCACAACTTCGACAAGCGCAAGAGCATTCACCTCGATCGAGGCGTCGGGAGGGGGGGAGGAGGGGGGGATGGTGAGGAAGGCGATGATAGTTTGCAGAGTGATTGCAGGGAGAGTTCACAGGCCATTGGAGAACATACAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCAGGAAAAGTTGGGCTGCATTCAAATATAGAAGAGCTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGCTTTGTGGTAATTTGCAAAGCATGA 1341 49.81 MPTVWLSLKKSLHCKSGPSEVHDPKSRRNLGAILTRKTGGGRSGCSRSIANLKDVIHGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILTNSRCELKITGFHGAFPPDVPASTDEPLTDRPAASTFVGTLTPGTPGPGGHPTMHYFDPSFRSSSRKFPFREGFGSSNKSCGGGGGARSLGGGGGGGVHTCNRISLETEIDGNRSSSAVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEHRETVKIKASKLPKKHPRCLADGNELLRFFGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFTSIEASGGGEEGGMVRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4757288 4759190 - CmaCh04G009220.1 Cma04g00922 292003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00922 446 PANTHER - 2 446 - -
Cma04g00922 446 Gene3D - 234 445 - -
Cma04g00922 446 ProSitePatterns Zinc finger C2H2 type domain signature. 211 232 IPR013087 -
Cma04g00922 446 SUPERFAMILY ADP-ribosylation 234 445 - -
Cma04g00922 446 MobiDBLite consensus disorder prediction 57 77 - -
Cma04g00922 446 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01157 Cma-Chr1:8450329 Cma04g00922 Cma-Chr4:4757288 0 dispersed
Cma04g00922 Cma-Chr4:4757288 Cma09g00919 Cma-Chr9:4582915 0 dispersed
Cma20g00355 Cma-Chr20:1740357 Cma04g00922 Cma-Chr4:4757288 1.46E-54 dispersed
Cma16g00817 Cma-Chr16:4537298 Cma04g00922 Cma-Chr4:4757288 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34822 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00922 - - cmax:111489735 806.594