Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00930 ATGGCAATCAAACTCTATATTGTTTTCTATTCCATGTACGGACATGTTGAGAGACTTGCAGAAGAGATTAAGAAGGGGGCAGAATCTGTAGAAGGTGTTGAAGCCAAGTTGTGGCAGGTACCGGAAACATTAACTGAGGATGTCCTTGGCAAGATGAGCGCACCATCAAAGAGTGATGTGCCAATTATCACCCCGACCGAACTCCCTGAGGCCGATGGTTTAGTTTTTGGCTTCCCTACTAGATTTGGAATGATGGCTGCCCAATTCAAAGCATTTCTGGATGCAACTGGAGGTCTTTGGAGAACTCAACAACTTGCAGGCAAGCCTGCTGGTATCTTTTACAGTACTGGATCCCAGGGAGGTGGACAGGAAACTACCGCGTTGACTGCCATCACTCAGCTGGTTCACCACGGAATGATATTTGTTCCCATTGGTTACACTTTCGGTGCTGGCATGTTCGAGATGGAGCACGTTAAAGGTGGAAGTCCTTATGGAGCTGGAACATTCGCAGGTGATGGCTCAAGAAAACCAACCACTCTTGAGTTGGAGCAAGCCTTCCACCAAGGAAAGTACCTTGCTACCATCACAAAGAAGCTCAAGGGATCAGCCTAG 612 47.55 MAIKLYIVFYSMYGHVERLAEEIKKGAESVEGVEAKLWQVPETLTEDVLGKMSAPSKSDVPIITPTELPEADGLVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEHVKGGSPYGAGTFAGDGSRKPTTLELEQAFHQGKYLATITKKLKGSA 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4798364 4800873 - CmaCh04G009300.1 Cma04g00930 292011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00930 203 SUPERFAMILY Flavoproteins 4 200 IPR029039 -
Cma04g00930 203 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 199 IPR010089 GO:0003955|GO:0010181
Cma04g00930 203 Coils Coil 16 36 - -
Cma04g00930 203 ProSiteProfiles Flavodoxin-like domain profile. 5 193 IPR008254 GO:0010181
Cma04g00930 203 Pfam NADPH-dependent FMN reductase 17 144 IPR005025 GO:0016491
Cma04g00930 203 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 6 203 - -
Cma04g00930 203 Gene3D - 2 201 IPR029039 -
Cma04g00930 203 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 6 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00930 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - csv:101209481 384.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00507 Cma-Chr3:4944291 Cma04g00930 Cma-Chr4:4798364 5.90E-121 dispersed
Cma04g00930 Cma-Chr4:4798364 Cma07g00290 Cma-Chr7:1289449 2.63E-121 dispersed
Cma02g00425 Cma-Chr2:2149367 Cma04g00930 Cma-Chr4:4798364 3.48E-85 transposed
Cma02g00750 Cma-Chr2:4553145 Cma04g00930 Cma-Chr4:4798364 2.38E-99 transposed
Cma03g00770 Cma-Chr3:6000921 Cma04g00930 Cma-Chr4:4798364 4.59E-92 transposed
Cma16g00840 Cma-Chr16:4853807 Cma04g00930 Cma-Chr4:4798364 3.79E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g383 . . . . Bpe09g00207 . Bma10g00523 Bma13g00995 Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0091 Cone9ag0120 Cone14ag1109 Cone15ag1123 . . . . Blo07g00931 Blo10g00789 Bda05g00749 Bda12g00874 . Bpe03g00814 . . . . . Cma04g00930 . Car04g00872 . . Cpe01g00845 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001002 3 2 2 5 4 3 4 2 3 2 2 2 4 2 2 4 2 3 2 3 2 2 2 3 3 3 2 3 3 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00930 Cma_Chr04 FPKM 8.201278 6.541495 8.954392 7.448272 4.855853 3.522519 3.337243 7.077685 6.176496 6.394924