Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00935 ATGGAGTCCATTCTGGCGCGAGCGCTCGAGTACACTCTTAAGTACTGGTTGAAATCTTTCTCTCGAGACCAGTTCAAATTGCAGGGCCGGACCGCGCAGCTCTCCAATTTGGATATCAATGGAGACGCTTTGCATTCCAGTATGGGGTTACCGCCGGCGCTAAATGTCACGACGGCGAGGGTTGGAAAGTTGGAGATTATGTTACCTTCGCTGAGTAATGTACAAGTGGAGCCAGTCGTTGTGCAAATAGATAGATTGGATTTAGTTTTAGAGGAGAATCCAGATGCAGATGTGGGTAGAAGCACGAGTAGTAATCAGACTTCCAACCCCGTGAAGGGTGGTGGTTATGGATTTGCCGATAAGATTGCAGATGGAATGACATTAGAGGTTCGTACGGTCAATCTGCTACTTGAAACTGGTGGTGGATCACGACATCAAGGAGGAGCAACCTGGGCCTCACCCTTGGCATCTATCACTATACGCAACCTTTTGCTATACACTACAAATGAAAATTGGCAGGTGGTCAATCTTAAGGAAGCCCGTGATTTCTCTGCAAATAAGAAATTTATATATGTATTCAAGAAACTTGAATGGGAATCTTTGTCAATTGATCTTCTGCCTCATCCGGATATGTTCGCTGATGCTAATTTGGCTCGTGCTCAAGAGGGAGCTAATGGCAGGGATGATGATGGTGCTAAACGTGTTTTTTTTGGTGGAGAGCGATTTATTGAAGGGATATCTGGTGAAGCTAATATAACATTGCAAAGGACCGAACTAAACAGTCCACTGGGTCTTGAGGTGAATTTACATATTACAGAAGCTGTGTGCCCAGCCTTAAGTGAACCAGGACTTCGTGCCTTTCTTCGCTTTTTGACAGGGTTATATGTTTGTTTAAATAGAGGAGATGTGGATCCAAAAGCTCAGCAGAGGTCAACAGAAGCAGCCGGACGTTCTTTAGTTTCTATTATTGTAGACCATATATTTTTGTGTGTGAAAGACCCTGAGTTTCAGCTCGAATTTTTGATGCAGTCATTATTCTTTTCTCGGGCTAGTGTTAGCGATGGACAAAATGACAATAACTTGACGAGAGTCATGATTGGTGGACTTTTCTTGAGGGATACTTTTTCACGCCCTCCATGCACGTTAGTACAACCAGCAATGCGGGCTGTTACAGATGACTTTTTACATGTTCCAGAATTTGCTAAAAACTTCTGCCCACCAATATATCCCTTCAAAGACAAGCAGTGGGAATTAAGTGGAAGTGTTCCTTTATTGTGCCTTCACTCTGTGCAGTTCAAACCTTCTCCAGTCCCCCCATCTTTTGCTACCCAAACAGTCATCCACTGCCAACCTCTCACAATTCATCTTCAGGAAAAATCATGTTTGAGGATATCATCTTTCCTAGCTGATGGAATAGTTGTGAATCCTGGTTCTGTTTTGCCAGATTTCTCCATAAATTCTATTTTACTTTCACTTAAGGAGCTAGATGTTACTGTTCCAATAGACGTGGCAAAATCTACTAATTATCATAGCAGCTGGGTTGGTACCTCTCAAAGCTCTTTTGATGGAGCTCGTCTTCATATTAAGAATATGCAATTTTCTGAGTCACCTTCTCTAAAGCTTAGACTTCTGAACTTGGAAAAAGATCCTGCTTGCTTCCTTCTCTGGGAAGGTCAACCAATTGATGCTAGCCAGAAAAAATGGGCCACTAGCGTGTCTCAGGTTAGTTTATCGTTAGAAACATACAACAAAGTGATTGGATCCAAGAGTTCTGATGCTATTTTAGCCTCGTTGAGATGTGTGGAGCTGACAGACGTTTCCATTGAAGTAGCTATGGCAACTGCAGATGGAAAAATATTAACAGTTCTTCCTCCTCCTGGGGGTTTTGTGAGAGTTGGGGTTTCCTGTCAACAGTATCTATCTAACACGTCAGTCGATCAATTATTTTTTGTTCTAGATCTTTATGCATACTTTGGTAGAGTTACTGAAAAGATAGCCCTTGTTGGAAAGAAAAATCGACCAAAAGAAAGTAGGAGTAACTTATTGGCTGGAAAGCTTGTGGATAAGGTTCCAAGTGATACTGCTGTTAGTTTATTGGTCAAGAACATTCAACTTAGATTTCTGGAGTCTTCTTCCACAATTGTTGGGGAACTGCCTCTTGTTCAATTTATTGGCAATGATATGTTCATTAAAGTTGCTCACAGAACGCTTGGTGGTGCTGTTGCTATTTCATCCACTGTAAAGTGGGATAATGTTGAAGTGGATTGTGTAGACACCGAAGGAAATATTGCATATGACAATGGAACCGTTTCAACATCAATTGAAAATGGTTCTTTTGTAAATGGGAACGGATTATCACAACTAAGAGCAATTCTTTGGGTACATAACAAAGGGGATAGATTTACAACCCCGTTTCTCGATGTTAGCATAGTGCATGTGATTCCTTTAAATGAGCGAGACATGGAGTGCCATAGTTTGAATGTGTCAGCTTGTGTTGCTGGAGTGCGCCTAAGTGGAGGAATGAACTATGCTGAAGCGTTGCTGCATCGATTTGGAATTCTTGGCCCTGATGGTGGCCCAGGAAAGGGTCTGATGAGAGGTCTGGAGAATCTTCGGGCAGGGCCACTTGCAAAACTTTTCAAAACTTCGCCACTTCTTGCGGGCAGTTTAGAAGGAGATGGGAAAGAAAGTACTGTATTGCAATTAGGAAAGCCAGATGATGTGGACGTTTCCATAGAACTCAAAAATTGGTTATTTGCGCTTGAAGGTGAACAAGAAATGTCAGAAAGGTGGTGGTTTTATAATCCTAATAATGCAGGCAGAGAAGAGAGGTGTTGGCACACTTCTTTCCAGAGCTTCCGAGTGAAAGCACATAGTAGACCGAAGGAACTACTAAATGGCAAAGGAAGATCATTTGGAGCTCAACAGTATCCCGTGGAGTTAGTGATAGTCAGCGTTGAGGGACTGCAAACATTGAAGCCTCAGATTCAAAAGAACACCCATCATACTGTTTCTCTCCCCAATGGGGTGAATGAAACGGTTGAGCCACTTGGAGGGATAAATCTTGAAGCTCGCTTGGTGGTATCTGAGGATAACGTTGATGATGAGATGGCCAACTGGATTATGGAAAACTTGAAGTTCTCTGTCAAGCATCCGATTGAGGCTGTTGTTACAAAGAACGAACTGCAACATCTTGCCTTACTATTCAAGTCAGAAGTTGATTCGATGGGTCGAATTGCTGCTGGAGTTCTTCGGCTGCTAAAGCTGGAGAGTTCTATTGGTCTAACCACCTTGGATCAGCTAAGTAACCTTGGAAGTGAAAGCATTGATAAGATCTTCACCCCAGAAAAGCTTAGCAGCAGGGGAAGTAGTGCAGCCAGTTTTGGATTCTCCCCATCGACATATTTGATTGGGGAAAGCCCACGACCAACCATAGAATCTACAGTGACATCTCTGGAGCAGGCTGTTCTCGATTCCCAATCTAAATGCACCTCTCTCATGACTGAACTCAGCAGTTCAGATTCGTTGGTACATGTTGCAACTATTAAGCAACTCTACGAGAAATTTGATAGCATGCAAACATTACTGTCGAGATTGCGGAATCAAATCTGA 3612 42.69 MESILARALEYTLKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHSSMGLPPALNVTTARVGKLEIMLPSLSNVQVEPVVVQIDRLDLVLEENPDADVGRSTSSNQTSNPVKGGGYGFADKIADGMTLEVRTVNLLLETGGGSRHQGGATWASPLASITIRNLLLYTTNENWQVVNLKEARDFSANKKFIYVFKKLEWESLSIDLLPHPDMFADANLARAQEGANGRDDDGAKRVFFGGERFIEGISGEANITLQRTELNSPLGLEVNLHITEAVCPALSEPGLRAFLRFLTGLYVCLNRGDVDPKAQQRSTEAAGRSLVSIIVDHIFLCVKDPEFQLEFLMQSLFFSRASVSDGQNDNNLTRVMIGGLFLRDTFSRPPCTLVQPAMRAVTDDFLHVPEFAKNFCPPIYPFKDKQWELSGSVPLLCLHSVQFKPSPVPPSFATQTVIHCQPLTIHLQEKSCLRISSFLADGIVVNPGSVLPDFSINSILLSLKELDVTVPIDVAKSTNYHSSWVGTSQSSFDGARLHIKNMQFSESPSLKLRLLNLEKDPACFLLWEGQPIDASQKKWATSVSQVSLSLETYNKVIGSKSSDAILASLRCVELTDVSIEVAMATADGKILTVLPPPGGFVRVGVSCQQYLSNTSVDQLFFVLDLYAYFGRVTEKIALVGKKNRPKESRSNLLAGKLVDKVPSDTAVSLLVKNIQLRFLESSSTIVGELPLVQFIGNDMFIKVAHRTLGGAVAISSTVKWDNVEVDCVDTEGNIAYDNGTVSTSIENGSFVNGNGLSQLRAILWVHNKGDRFTTPFLDVSIVHVIPLNERDMECHSLNVSACVAGVRLSGGMNYAEALLHRFGILGPDGGPGKGLMRGLENLRAGPLAKLFKTSPLLAGSLEGDGKESTVLQLGKPDDVDVSIELKNWLFALEGEQEMSERWWFYNPNNAGREERCWHTSFQSFRVKAHSRPKELLNGKGRSFGAQQYPVELVIVSVEGLQTLKPQIQKNTHHTVSLPNGVNETVEPLGGINLEARLVVSEDNVDDEMANWIMENLKFSVKHPIEAVVTKNELQHLALLFKSEVDSMGRIAAGVLRLLKLESSIGLTTLDQLSNLGSESIDKIFTPEKLSSRGSSAASFGFSPSTYLIGESPRPTIESTVTSLEQAVLDSQSKCTSLMTELSSSDSLVHVATIKQLYEKFDSMQTLLSRLRNQI 1203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4813426 4826279 - CmaCh04G009350.1 Cma04g00935 292016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00935 1203 MobiDBLite consensus disorder prediction 94 113 - -
Cma04g00935 1203 Coils Coil 1182 1202 - -
Cma04g00935 1203 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1202 - -
Cma04g00935 1203 PANTHER UNCHARACTERIZED 1 1202 IPR026728 -
Cma04g00935 1203 Pfam N-terminal region of Chorein or VPS13 1 100 IPR026854 -
Cma04g00935 1203 MobiDBLite consensus disorder prediction 97 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00935 - - - csv:101210396 2163.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00935 Cma16g00844 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00844 Cma-Chr16:4946461 Cma04g00935 Cma-Chr4:4813426 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g431 . . . . Bpe09g00192 . . Bma13g01029 . Cmo04g01004 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1122 Cone15ag1140 . . . . . Blo10g00806 . Bda12g00890 . . . . . . . Cma04g00935 Cma16g00844 Car04g00874 . . Cpe01g00849 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006065 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00935 Cma_Chr04 FPKM 7.287426 6.971665 17.762703 16.58585 8.028735 7.155715 8.762145 14.240565 13.487253 14.441379