Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00938 | ATGTCTTCTTCTGCGGGGTTTTGTCGGCATTTCTGGGCCGCCCGCTTAAATTCTGAAGCGAATAGGGCCCCGAGATTCTCCATTGATTTTTGGCTTCAACTTCGACACACTTCTCTCTACGCTGGCCTCTCTCTTCTCTCTTTCACTTTACTGCTCTCAATTCGACGAAAATTCACGCTGGAAACATCGCCCTTCCTGCTCAATCACCATCACCATCAACGCGATATGGTATCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATCGATGATATTCCTGTTCCTGATGATGCCAATTTCTCTGCACCTACTGCCGGTTTCTCTTGGTCCATGCAACCCTTCAACGCCTCCTCCGATGTCAGTGCGGAAATTGAAGGATCATTGTTGGAATCAGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCAAAAGCATGTAGGGAAAAGCTGCGAAGGGACAGATTAAATGACAAATTTTTGGAATTGGGTGCTACTCTGGAGCCTGGAAGGGCACTGAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATGGTCACTCAGTTACGCAGTGAAGCCCAGATGTTGAAGGACTCAAATACAAGCCTACTCGAGAAGATTAAAGATTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCATAGGCTAAAACTGGAGAAGGAGAAGTTGGAGCAGCAACTAAAAGCCACGAATTCACAACCTGGCTTCATGCCTCCAGCCATCCCTGCAACTTTTGCAGCACAAGGCCAAGCACCTGGAAACAAGTTGGTTCCATTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCTGTTGACACCTCGCAAGATCACGTACTTCGACCCCCTGTTGCATAA | 933 | 47.8 | MSSSAGFCRHFWAARLNSEANRAPRFSIDFWLQLRHTSLYAGLSLLSFTLLLSIRRKFTLETSPFLLNHHHHQRDMVSPETTNWLFDYALIDDIPVPDDANFSAPTAGFSWSMQPFNASSDVSAEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGATLEPGRALKTDKAAILIDAVRMVTQLRSEAQMLKDSNTSLLEKIKDLKAEKNELRDEKHRLKLEKEKLEQQLKATNSQPGFMPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4834656 | 4838951 | - | CmaCh04G009380.1 | Cma04g00938 | 292019 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00938 | 310 | PANTHER | TRANSCRIPTION FACTOR ILR3 | 76 | 310 | - | - | |
Cma04g00938 | 310 | Gene3D | - | 153 | 229 | IPR036638 | GO:0046983 | |
Cma04g00938 | 310 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 155 | 216 | IPR036638 | GO:0046983 | |
Cma04g00938 | 310 | CDD | bHLH_AtILR3_like | 159 | 231 | - | - | |
Cma04g00938 | 310 | PANTHER | BHLH TRANSCRIPTION FACTOR | 76 | 310 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Cma04g00938 | 310 | SMART | finulus | 157 | 208 | IPR011598 | GO:0046983 | |
Cma04g00938 | 310 | Pfam | Helix-loop-helix DNA-binding domain | 155 | 202 | IPR011598 | GO:0046983 | |
Cma04g00938 | 310 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 151 | 202 | IPR011598 | GO:0046983 | |
Cma04g00938 | 310 | Coils | Coil | 206 | 254 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01152 | Cma-Chr1:8424445 | Cma04g00938 | Cma-Chr4:4834656 | 1.56E-111 | dispersed | |
Cma04g00938 | Cma-Chr4:4834656 | Cma20g00638 | Cma-Chr20:2971125 | 2.98E-89 | dispersed | |
Cma09g00925 | Cma-Chr9:4614766 | Cma04g00938 | Cma-Chr4:4834656 | 2.12E-29 | dispersed | |
Cma16g00846 | Cma-Chr16:4970716 | Cma04g00938 | Cma-Chr4:4834656 | 1.86E-143 | wgd | |
Cma04g00938 | Cma-Chr4:4834656 | Cma09g00924 | Cma-Chr9:4612273 | 6.95E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34823 | PF00010 | HLH | 5.40E-08 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00938 | - | - | zju:107431674 | 347.051 |