Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00938 ATGTCTTCTTCTGCGGGGTTTTGTCGGCATTTCTGGGCCGCCCGCTTAAATTCTGAAGCGAATAGGGCCCCGAGATTCTCCATTGATTTTTGGCTTCAACTTCGACACACTTCTCTCTACGCTGGCCTCTCTCTTCTCTCTTTCACTTTACTGCTCTCAATTCGACGAAAATTCACGCTGGAAACATCGCCCTTCCTGCTCAATCACCATCACCATCAACGCGATATGGTATCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATCGATGATATTCCTGTTCCTGATGATGCCAATTTCTCTGCACCTACTGCCGGTTTCTCTTGGTCCATGCAACCCTTCAACGCCTCCTCCGATGTCAGTGCGGAAATTGAAGGATCATTGTTGGAATCAGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCAAAAGCATGTAGGGAAAAGCTGCGAAGGGACAGATTAAATGACAAATTTTTGGAATTGGGTGCTACTCTGGAGCCTGGAAGGGCACTGAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATGGTCACTCAGTTACGCAGTGAAGCCCAGATGTTGAAGGACTCAAATACAAGCCTACTCGAGAAGATTAAAGATTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCATAGGCTAAAACTGGAGAAGGAGAAGTTGGAGCAGCAACTAAAAGCCACGAATTCACAACCTGGCTTCATGCCTCCAGCCATCCCTGCAACTTTTGCAGCACAAGGCCAAGCACCTGGAAACAAGTTGGTTCCATTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCTGTTGACACCTCGCAAGATCACGTACTTCGACCCCCTGTTGCATAA 933 47.8 MSSSAGFCRHFWAARLNSEANRAPRFSIDFWLQLRHTSLYAGLSLLSFTLLLSIRRKFTLETSPFLLNHHHHQRDMVSPETTNWLFDYALIDDIPVPDDANFSAPTAGFSWSMQPFNASSDVSAEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGATLEPGRALKTDKAAILIDAVRMVTQLRSEAQMLKDSNTSLLEKIKDLKAEKNELRDEKHRLKLEKEKLEQQLKATNSQPGFMPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4834656 4838951 - CmaCh04G009380.1 Cma04g00938 292019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00938 310 PANTHER TRANSCRIPTION FACTOR ILR3 76 310 - -
Cma04g00938 310 Gene3D - 153 229 IPR036638 GO:0046983
Cma04g00938 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 216 IPR036638 GO:0046983
Cma04g00938 310 CDD bHLH_AtILR3_like 159 231 - -
Cma04g00938 310 PANTHER BHLH TRANSCRIPTION FACTOR 76 310 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma04g00938 310 SMART finulus 157 208 IPR011598 GO:0046983
Cma04g00938 310 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Cma04g00938 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 202 IPR011598 GO:0046983
Cma04g00938 310 Coils Coil 206 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01152 Cma-Chr1:8424445 Cma04g00938 Cma-Chr4:4834656 1.56E-111 dispersed
Cma04g00938 Cma-Chr4:4834656 Cma20g00638 Cma-Chr20:2971125 2.98E-89 dispersed
Cma09g00925 Cma-Chr9:4614766 Cma04g00938 Cma-Chr4:4834656 2.12E-29 dispersed
Cma16g00846 Cma-Chr16:4970716 Cma04g00938 Cma-Chr4:4834656 1.86E-143 wgd
Cma04g00938 Cma-Chr4:4834656 Cma09g00924 Cma-Chr9:4612273 6.95E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34823 PF00010 HLH 5.40E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00938 - - zju:107431674 347.051