Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00941 ATGGCTTCCATGGCTTCCACTTTCACCACCAAGCTCCAAACCCCCTCCTCCTCCTCCTCCTCCTTACTCGACTCCTCTTTCCATGGCACCCCTCTGGCCCCTCCTCCTCCTCCTCCTTCTCTCCGCCTCAAATCCACCCCCGCCGCTTTCTCCATCTCCGCCTCCGCCTCTCAGCACCAGCCCTACGATTTGAACTCCTTCAAATTCAACCCCATCAAGGAGTCCATCGTCTCACGTGAGATGACCCGCCGTTACATGACCGACATGATCACTTACGCCGACACTGATGTCGTCATCGTCGGCGCTGGCTCTGCCGGCCTCTCTTGCGCTTATGAACTTAGCAAAAACCCTGACATTCGCATCGCCATCATCGAGCAGTCCGTATCCCCCGGCGGCGGTGCATGGCTCGGTGGCCAGCTCTTCTCTGCTATGGTGGTACGGAAGCCAGCCCACTGCTTCTTGGACGAGGTTGGTGTGGAGTACGACGAGCAAGAGGACTACGTTGTAATTAAGCACGCGGCTCTGTTCACCTCAACGATCATGAGCAAGCTGCTGGCACGGCCCAATGTCAAGCTGTTCAACGCCGTGGCAGCAGAGGATTTGATCGTCAAGGGCGGCAGAGTTGGCGGTGTTGTCACCAACTGGGCTTTAGTGTCAATGAACCATGACACACAGTCCTGCATGGACCCTAATGTCATGGAGGCGAAGGTGGTGGTCAGCTCTTGTGGCCACGACGGGCCCTTCGGAGCCACCGGAGTGAAGCGGCTTAAGAGCATTGGTATGATCGATTCCGTCCCGGGAATGAAGGCCCTGGACATGAACACGGCGGAGGATGCCATTGTTAGGCTGACCCGAGAGGTGGTGCCTGGCATGATCGTAACGGGTATGGAGGTGGCGGAGATCGACGGAGCTCCAAGAATGGGGCCAACGTTCGGGGCAATGATGATATCGGGGCAGAAGGCGGCGCACCTGGCGTTGAAGTCATTGGGGCTGGAAAATTGCATTGAGGATGAAGCAGCTGATCTGATACTGGCGGCGGGAGAGTCGCCGGAGGTTGCAGATGGTTGA 1068 57.58 MASMASTFTTKLQTPSSSSSSLLDSSFHGTPLAPPPPPPSLRLKSTPAAFSISASASQHQPYDLNSFKFNPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPDIRIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHCFLDEVGVEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGLENCIEDEAADLILAAGESPEVADG 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4842460 4844391 + CmaCh04G009410.1 Cma04g00941 292022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00941 355 TIGRFAM TIGR00292: thiazole biosynthesis enzyme 74 329 IPR002922 -
Cma04g00941 355 Gene3D - 63 93 - -
Cma04g00941 355 MobiDBLite consensus disorder prediction 1 27 - -
Cma04g00941 355 Gene3D - 94 329 IPR036188 -
Cma04g00941 355 SUPERFAMILY FAD/NAD(P)-binding domain 57 323 IPR036188 -
Cma04g00941 355 MobiDBLite consensus disorder prediction 1 44 - -
Cma04g00941 355 PANTHER THIAMINE THIAZOLE SYNTHASE, CHLOROPLASTIC 1 355 - -
Cma04g00941 355 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 5 338 IPR027495 GO:0009228
Cma04g00941 355 Pfam Thi4 family 78 311 - -
Cma04g00941 355 PANTHER THIAMINE THIAZOLE SYNTHASE 1 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00941 K03146 THI4, THI1; cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60] - csv:101211553 588.186
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00941 Cma16g00849 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00849 Cma-Chr16:5018136 Cma04g00941 Cma-Chr4:4842460 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g456 . . . . Bpe09g00188 . . Bma13g01034 Cmo16g00910 Cmo04g01011 . . . . . . . . . . . . . . Cla10g00528 Cam10g0522 Cec10g0539 Cco10g0529 Clacu10g0544 Cmu10g1370 Cre10g0773 . . . . . Csa03g00534 . Cme06g02280 Blo07g00918 Blo10g00810 Bda05g00733 Bda12g00895 . Bpe03g00802 . . Sed09g0362 . . Cma04g00941 Cma16g00849 Car04g00879 Car16g00855 . Cpe01g00853 Bhi11g00650 Tan01g1679 Cmetu06g1989 . . Mch10g1226 . . . . . . . . Lsi05g00622 . Chy06g01796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007369 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00941 Cma_Chr04 FPKM 0.0 0.189006 23.777069 21.696352 725.412903 739.318054 672.009338 1.275819 0.794077 0.742784