Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00944 ATGGCTAAGAAGAGCAGTTTTGCAGTGAGCAGTTTTGGGGTAATGCTTCTATTGGTGCAGAATGTTTGCGGAGTTGAGTATCAAGTGGGAGGATCAAAGGGCATTTGGGGCGTTCCTTCTGACCCTGATGCTCAGAGTTTGAACCAATGGGCTGAATCTCGTAGATTCCAAATTGGTGATTCCATAGTGTTCAACTACCAAAGTGGGCAAGACTCGGTGCTGTTAGTGAACCAAGATGACTACAATAACTGTCATACAGAATCGCCCATAAAGCACTTTTCAGATGGCCACACCATCATCAAGTTTGAAAAATCTGGCCCTCACTACTTCATAAGTGGTATCAAAGACAATTGCCTCAAGAATGAGAAATTGGTGGTGGTTGTATTGGCTGATAGAAACAAGCAATACTCTTCTCCGCCACCAGCTCCGGTCGAGGAACCACAATCTCCTCCGCCCGAAGCTCCGGCCCAGATGAACCCAACCCCGTCGCCAACCGCCGAGGAGCCTCCTTCCAATGCAGCATCATCTTCTACATCTATCATCCGCTTATTTTTGGGGTTAACTGGAATGGTTGCAACTTCCATGATTCTTTTGTAA 597 46.57 MAKKSSFAVSSFGVMLLLVQNVCGVEYQVGGSKGIWGVPSDPDAQSLNQWAESRRFQIGDSIVFNYQSGQDSVLLVNQDDYNNCHTESPIKHFSDGHTIIKFEKSGPHYFISGIKDNCLKNEKLVVVVLADRNKQYSSPPPAPVEEPQSPPPEAPAQMNPTPSPTAEEPPSNAASSSTSIIRLFLGLTGMVATSMILL 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4849942 4850998 - CmaCh04G009440.1 Cma04g00944 292025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00944 198 Pfam Plastocyanin-like domain 41 120 IPR003245 GO:0009055
Cma04g00944 198 MobiDBLite consensus disorder prediction 140 167 - -
Cma04g00944 198 PANTHER BLUE COPPER PROTEIN 10 153 IPR039391 GO:0009055
Cma04g00944 198 CDD OsENODL1_like 26 129 IPR041846 -
Cma04g00944 198 MobiDBLite consensus disorder prediction 135 174 - -
Cma04g00944 198 Gene3D - 25 140 IPR008972 -
Cma04g00944 198 PANTHER PLASTOCYANIN-LIKE DOMAIN PROTEIN 10 153 - -
Cma04g00944 198 ProSiteProfiles Phytocyanin domain profile. 25 130 IPR003245 GO:0009055
Cma04g00944 198 SUPERFAMILY Cupredoxins 24 129 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00944 - - - csv:101212032 265.388
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01146 Cma04g00944 CCT
Cma04g00944 Cma16g00852 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01146 Cma-Chr1:8386163 Cma04g00944 Cma-Chr4:4849942 1.66E-50 dispersed
Cma04g00944 Cma-Chr4:4849942 Cma12g00366 Cma-Chr12:1874711 1.70E-36 dispersed
Cma02g00095 Cma-Chr2:485515 Cma04g00944 Cma-Chr4:4849942 4.70E-35 transposed
Cma16g00852 Cma-Chr16:5048663 Cma04g00944 Cma-Chr4:4849942 1.37E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g460 . . Bda07g00343 . . . . . Cmo16g00907 Cmo04g01014 Cma01g01146 . . . Sed04g3189 . . Bhi09g01933 Tan01g4518 Cmetu04g2832 . Hepe01g1302 Mch11g1162 . Cla10g00524 Cam10g0519 Cec10g0536 Cco10g0526 Clacu10g0541 Cmu10g1367 Cre10g0769 . . . . Lsi04g01232 Csa03g00531 Chy04g00987 Cme06g02276 . . . . . . . . Sed07g1925 Cmo01g01199 . Cma04g00944 Cma16g00852 Car04g00882 Car16g00852 . . Bhi11g00646 Tan01g1683 Cmetu06g0869 . . Mch10g1234 . Cla05g01522 Cam05g1635 Cec05g1638 Cco05g1671 Clacu05g1624 Cmu05g1522 . Lsi05g00619 . Chy06g01800 Cme04g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003173 1 2 0 0 0 2 3 2 2 2 2 2 3 2 2 2 2 0 0 2 2 2 2 2 2 3 2 2 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00944 Cma_Chr04 FPKM 54.92408 62.090092 22.441191 24.710291 20.214119 19.407564 24.342211 0.0 0.131272 0.134285