Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00946 ATGAGTCGGGCTGATCAAGGAATCAGCGCTGATAATTTAGCTGATGTTCATTTAAAGCCAAAACGTGGTCGTCCCAGAAAATATCTGAAGTTAAATTATGATGACAATACTCTTAATGCAAAGAAAAGAGGTAAGAAACATTTGGAGGCTATTCCTATTTCTCCCGGTTCTGGAGTAAATGGAGACCAATCAGATCCAGCAATTCAAATTCAAAATGTAGCTGATGTGGGACAGGTTGTGTCTGGTGTCATTGAGGCAGTATTTGATGCTGGATATCTGCTGTGTGTCAGGGTTGGCGGCGCTGGAGTAACTTTGAGGGGTGTTGTTTTTAAGCCTGGGCATTATGCCCCTGTTTTGGCAGTGAACGATGTGGCCCCAGATGTTCAAATGATCAGTAGAAATACGGTTCCTTTTGCTACAGAAAACAAAACTAATGGAAATAACCCCCGATCTAAAAATGGAGAAGTTCCATCCCGTGAATCATCAGGTGCCAAACTGGGGTTTAAATGCACACCTCCACACTCTACCTGGGATGCTTCAAAAGACAAATCTATATTTGCCCAAATATCACCTTCGCGAAGCTCAAGAGGTTCTGTGGTCCCTGTTGTACTGCAGCCTGCCAAATTAACTAATGGATCCTCCGTTGCCACTAAATCATTTACAATTCAAACTGCTGGTATTGACTTGAAAGGAAAAGAGGTTCTTGTAGGTACTTCTACAGCAAAAGAATCAGCTCCCGCCAATCCTTTCCAACCCCAAACTAGCCAGCAGGTCTTACAGGGTGATGCTTCTGTTGAAAATAGTTCTGACGACCAATCCTTTGTAGTGGTAGCCCGTGATTCAGACGGTAAATCAATGACATTGCCTAGAACGCCTTTCGAGAGTCTTGTGACTGAAGTGATCAAGAGAATTCAAACCCCTTCTCTGTCGACTGAAATGCAGACCGAGAATGACAAGTCAACTGGTGGTAAGACATCAGCTAAAGAATGCAAAGGTAACTCGGAGGTTGTGGCCAACATAGTGGATGGACCTTTGATGATTGAACCTCTAAAAGCAGTGCAGCCCCATGATGACAGTTCAGAATCTAATCCCAAAGCTCTGGATGATGAGTCTAGAACTGGCAAAATGACTGAACTGTTACAGGAAAACATGATGGAAACTCCAGAGCCATGGGCTGAAGTGCAGAACCTGGGTTTGGTGCTCAAGTTAGATGAGCCTGGGGAGTCAGAAACAGTGATTGAAGCTGGTAACCAAAAGCAAATCTAA 1266 43.84 MSRADQGISADNLADVHLKPKRGRPRKYLKLNYDDNTLNAKKRGKKHLEAIPISPGSGVNGDQSDPAIQIQNVADVGQVVSGVIEAVFDAGYLLCVRVGGAGVTLRGVVFKPGHYAPVLAVNDVAPDVQMISRNTVPFATENKTNGNNPRSKNGEVPSRESSGAKLGFKCTPPHSTWDASKDKSIFAQISPSRSSRGSVVPVVLQPAKLTNGSSVATKSFTIQTAGIDLKGKEVLVGTSTAKESAPANPFQPQTSQQVLQGDASVENSSDDQSFVVVARDSDGKSMTLPRTPFESLVTEVIKRIQTPSLSTEMQTENDKSTGGKTSAKECKGNSEVVANIVDGPLMIEPLKAVQPHDDSSESNPKALDDESRTGKMTELLQENMMETPEPWAEVQNLGLVLKLDEPGESETVIEAGNQKQI 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4857238 4861383 + CmaCh04G009460.1 Cma04g00946 292027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00946 421 MobiDBLite consensus disorder prediction 139 175 - -
Cma04g00946 421 MobiDBLite consensus disorder prediction 139 158 - -
Cma04g00946 421 PANTHER AT HOOK MOTIF-CONTAINING PROTEIN 1 410 IPR045881 -
Cma04g00946 421 MobiDBLite consensus disorder prediction 352 376 - -
Cma04g00946 421 MobiDBLite consensus disorder prediction 361 376 - -
Cma04g00946 421 MobiDBLite consensus disorder prediction 307 321 - -
Cma04g00946 421 PANTHER AT HOOK MOTIF-CONTAINING PROTEIN 1 410 - -
Cma04g00946 421 MobiDBLite consensus disorder prediction 240 271 - -
Cma04g00946 421 MobiDBLite consensus disorder prediction 307 330 - -
Cma04g00946 421 MobiDBLite consensus disorder prediction 241 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00946 - - - csv:101213958 545.428
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00946 Cma16g00863 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00946 Cma-Chr4:4857238 Cma16g00863 Cma-Chr16:5130249 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g505 . . . . Bpe09g00178 . Bma10g00545 . Cmo16g00900 . . . . . . . . . . . . . . . Cla10g00509 Cam10g0504 Cec10g0521 Cco10g0508 Clacu10g0525 Cmu10g1351 Cre10g0755 . . . . . Csa03g00518 . Cme06g02257 Blo07g00908 Blo10g00828 Bda05g00724 . . Bpe03g00794 . . . . . Cma04g00946 Cma16g00863 . . . . Bhi11g00624 . . . . . . . . . . . . . Lsi05g00603 . Chy06g01812 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004473 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 5 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00946 Cma_Chr04 FPKM 5.231023 4.495965 3.896098 4.049315 9.287034 7.708064 8.879928 6.837647 7.131629 6.889809