Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00948 ATGAAGCAGAAATTCAAATCCAAGAAGTCGTCTGGCAAGCAGAAGCGTCTATCCGAAATTGAAGAAATTAAGCTCTTGAATTCATGGATTCAATCCCAGAAACCCGACTCAGGCTCTAACCCGATGTCGCTTCCTCCACCTCCTGCGGGTGCTCCCCTTGGCCGCATCGACGCCGATACTTACTCTTGTTACGCCGGAGCTACTAAGTTTGATCAGTTGCCGATTTCGAACAAGACCAAGGATGGGTTGCGGAAAGCTGAATTCGTTGATATGACGGACATACAGAGGGCTTCACTGCCTCACGCCCTTTGTGGTCGAGATATTCTTGGTGCAGCCAAAACTGGTTCAGGAAAGACGCTAGCTTTTCTCATACCTGTTCTTGAGAAGTTGTATAGAGAGAGATGGGGTCCTGAGGATGGAGTTGGGAGTATAATAATATCTCCCACAAGAGAATTAGGAGCTCAGCTTTTTGATGTTCTAAAAGCTGTTGGGAAATTTCATAATTTCAGTGCTGGCCTTTTAATTGGTGGTCGTAAAGATGTTAACACTGAGAAGGAGCATGTGAATGAGTTGAACATTCTTGTTTGCACTCCCGGTCGACTCCTTCAGCACATGGACGAGACTCCAAATTTTGATTGTTCACAGTTGCAGGTTTTAGTCCTTGATGAAGCTGATCGTATTCTTGATGTCGGATTTAAGAAGACTTTAAATGCAATTATTTCACAGCTACCTAAGCACAGACAAACCTTTCTGTTCTCAGCAACTCAAACAAAGTCTGTTCAGGATCTTGCCAGACTCAGTTTGAAAGATCCTGAGTACCTTAGTGTTCATGAAGAATCTGTGACAGCTACCCCCAGTAGTTTACAACAAACTGCTTTGGTTGTTCCTCTCGAGCAAAAGCTAGACATGCTATGGAGCTTTATAAAGGCACATCTTAATTCTAAGATTCTTGTGTTTCTCTCAAGCTGCAAGCAGGTGAAATTTGTTTTTGAAACTTTCAAAAAGCTGCGTCCTGGAATCCCATTGAAGTGCCTCCATGGAAGGATGAAGCAGGACAAAAGGATGGGGATATATTCTGAGTTCTGTGAGAAGCGGTCAGTCCTCTTCTCAACAGATGTAGCCTCTAGAGGTCTTGATTTTAATAAGGCTGTTGACTGGGTTGTACAGGTTGATTGCCCAGAAGATGTGGCTTCTTACATACATAGAGTTGGCCGCACTGCTCGGTACCATTCAGGTGGGAGATCAGTTTTATTTCTTATGCCCTCGGAGATGAAAATGCTTGAACAATTAGAATCTGCTAAAGTACCTATTCAGCTTATCAAGGCAAATACAAAAAGACTTCAACCAGTTTCTGGTTTGCTGTCAGCTTTGTTAGTCAAGTATCCCAATTTTCAGCAACTCGCTCAAAGGGCCTTTATCACATATCTTCGATCAATTCATATCCAGAAGGATAAGGAAATCTTTGATGTTATGAAACTATCAATTGACGATTTTTCAGCTTCAATGGGGCTGCCAATGACCCCAAGAATCCGTTTCATTGATCAGAAAAAGAGGTCACAGAAGATGTCGGCTAACACTACCACTTATCTTGCGTTGGAATCGTCTGATAATGAGAATGCTTTAAATCCATCCGGTGAAGAATTGGAGTATGGCGACTTTAAAGAAAGCAACCAAGGACTTCTTCCTCCTACTGATATCCCTACTAGTGAAGTTGAAGATGCTGTGCCACGTACTCGGATTTTGAAGAAAAAGAAGTTGAAGATCAATGTCCATAGACCATTAGGGACGAGAGTCAGTTTTGATGACGAGGGCAACCCACTTGCCCCTCTTGCTAGGCTAGCTGACATCAAAAGTAGCAATGAGACATTTGTAGTCGACAAAGATCTAAAAAATGAGTTTTACAAAAAGAGGAGGGAAGAGTTGAAACAAGCTGACAAGGAAGACAAACTTCTCAATCATAATCGCCTTAAGGAGAAGCGGAAAGAGAAGATGAATAAGATGAAGAAGAGGGCTGCCAAAGAAATTGAGGATGACGATGACGTATCTGCGTCTGAAGAAGACAGACCTCAGAAAAGGTCCAAGAAATTTGTCGACTGTGATAGCGACATTGACAATAAAGCGGACTTAAATACAGAGTCGATTACAGTGGCAGAACAAGAGGAGTTGGCTCTCAAATTACTAAGTACTCTGCGCCCATGA 2199 42.61 MKQKFKSKKSSGKQKRLSEIEEIKLLNSWIQSQKPDSGSNPMSLPPPPAGAPLGRIDADTYSCYAGATKFDQLPISNKTKDGLRKAEFVDMTDIQRASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYRERWGPEDGVGSIIISPTRELGAQLFDVLKAVGKFHNFSAGLLIGGRKDVNTEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIISQLPKHRQTFLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPSSLQQTALVVPLEQKLDMLWSFIKAHLNSKILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDKRMGIYSEFCEKRSVLFSTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGRSVLFLMPSEMKMLEQLESAKVPIQLIKANTKRLQPVSGLLSALLVKYPNFQQLAQRAFITYLRSIHIQKDKEIFDVMKLSIDDFSASMGLPMTPRIRFIDQKKRSQKMSANTTTYLALESSDNENALNPSGEELEYGDFKESNQGLLPPTDIPTSEVEDAVPRTRILKKKKLKINVHRPLGTRVSFDDEGNPLAPLARLADIKSSNETFVVDKDLKNEFYKKRREELKQADKEDKLLNHNRLKEKRKEKMNKMKKRAAKEIEDDDDVSASEEDRPQKRSKKFVDCDSDIDNKADLNTESITVAEQEELALKLLSTLRP 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4870317 4875136 + CmaCh04G009480.1 Cma04g00948 292029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00948 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 426 IPR027417 -
Cma04g00948 732 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 220 228 IPR000629 -
Cma04g00948 732 MobiDBLite consensus disorder prediction 31 51 - -
Cma04g00948 732 SMART ultradead3 87 291 IPR014001 -
Cma04g00948 732 SMART DUF4217_3 449 512 IPR025313 -
Cma04g00948 732 CDD SF2_C_DEAD 288 419 - -
Cma04g00948 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 276 IPR027417 -
Cma04g00948 732 Pfam DEAD/DEAH box helicase 92 263 IPR011545 GO:0003676|GO:0005524
Cma04g00948 732 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 59 528 - -
Cma04g00948 732 PANTHER RNA HELICASE 59 528 - -
Cma04g00948 732 Pfam Domain of unknown function (DUF4217) 454 510 IPR025313 -
Cma04g00948 732 Gene3D - 287 533 IPR027417 -
Cma04g00948 732 Pfam Helicase conserved C-terminal domain 300 409 IPR001650 -
Cma04g00948 732 MobiDBLite consensus disorder prediction 684 707 - -
Cma04g00948 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 274 IPR014001 -
Cma04g00948 732 CDD DEADc_DDX10 79 277 - -
Cma04g00948 732 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 68 96 IPR014014 GO:0003724
Cma04g00948 732 Gene3D - 57 280 IPR027417 -
Cma04g00948 732 SMART helicmild6 327 410 IPR001650 -
Cma04g00948 732 Coils Coil 654 674 - -
Cma04g00948 732 MobiDBLite consensus disorder prediction 658 711 - -
Cma04g00948 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 448 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00948 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - csv:101213480 1249.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00948 Cma-Chr4:4870317 Cma13g00979 Cma-Chr13:7613551 7.92E-106 dispersed
Cma04g00948 Cma-Chr4:4870317 Cma15g01046 Cma-Chr15:6551181 6.76E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00948 Cma_Chr04 FPKM 3.401008 4.387043 6.630724 5.866701 8.798638 8.185204 7.944613 13.297804 13.992034 14.822594