Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00951 ATGAGGAGAAGACCTGGCATTGGAGGCCTGCAGACGGCTGCGGCAGCGAGGGACCAATACCGTCAGCTGGGTGAAAATGTAGCGAAGCTCAGAACCGATATGATGAAGGAGCAGCTCTCCACCTTTCGATCTCAGTTAGAGGATTTCGCGCGCAAACATAAGAAAGATATCAGCAAGAACCCGGCTTTCAGATCACAGTTTCATGAAATGTGTGCTAAAGTTGGAGTAGATCCCTTGGCCTCAAACAAGGGGTTTTGGGCAGAGCTATTAGGCATTGGTGATTTCTATTACGAGATTGGAGTGCAAATTGTTGACATTTGCTTGTCTACAAGACCCCACAATGGAGGCTTGATTAGCTTACAAGAACTTTGTACCTTGCTTCGGCAGAGAAGAAAAAGTGATCGTGAAGCTGTTTCTGAGGATGACTGCCTGCGAGCTATAAGTAAACTGAAGATATTAGGAAGTGGTTTTGAGGTAATTACTGTTGGCAAGAAAAAACTTGTCCGGTCAGTTCCAACCGAGTTGAACAAAGATCACAATGAAATTCTTGAGCTTGCCCAGGCTCAAGGCTATGTAACTGTGGAGGAGGTAGAGAGACAACTTTCTTGGACTTCTGGTCGTGCAGTTGATGCCCTCGATACTCTCCTGGATGAAGGTCTTGCAATGATTGATGATGGCCATCGTGATGGTAGACGTCGTTATTGGTTTCCTTGTGTTTCTCCTATTTCATCTTTACTCGGCACTGATGCCTGA 753 45.82 MRRRPGIGGLQTAAAARDQYRQLGENVAKLRTDMMKEQLSTFRSQLEDFARKHKKDISKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYEIGVQIVDICLSTRPHNGGLISLQELCTLLRQRRKSDREAVSEDDCLRAISKLKILGSGFEVITVGKKKLVRSVPTELNKDHNEILELAQAQGYVTVEEVERQLSWTSGRAVDALDTLLDEGLAMIDDGHRDGRRRYWFPCVSPISSLLGTDA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4878131 4881846 - CmaCh04G009510.1 Cma04g00951 292032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00951 250 Coils Coil 13 33 - -
Cma04g00951 250 Gene3D - 24 85 - -
Cma04g00951 250 Gene3D - 91 171 IPR036388 -
Cma04g00951 250 Pfam EAP30/Vps36 family 6 225 IPR040608 -
Cma04g00951 250 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 1 240 IPR016689 GO:0000814|GO:0071985
Cma04g00951 250 Gene3D - 172 245 IPR036388 -
Cma04g00951 250 SUPERFAMILY Winged helix DNA-binding domain 24 174 IPR036390 -
Cma04g00951 250 PIRSF ESCRT2_Vps22 1 244 IPR016689 GO:0000814|GO:0071985
Cma04g00951 250 SUPERFAMILY Winged helix DNA-binding domain 175 238 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00951 K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22 - csv:101213237 489.189
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g489 . . . . . Bpe08g01130 . . . Cmo04g01021 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00523 . Cme06g02261 . . . . . . . . . . . Cma04g00951 . Car04g00889 . . . . . . . . . . . . . . . . . Lsi05g00608 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012198 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00951 Cma_Chr04 FPKM 8.171718 10.981275 8.223072 9.234122 8.05234 8.918097 8.286575 7.010135 9.634405 11.97174