Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00953 ATGAATTGCTTTCAATGTTGCTTGACAGACAAGAAAGTCGATAGAAAATCTCTGAAAAAGAGCATTAAGGAGTATCAGGACACAAAAGCTCTAACCTCTTTTGCCAACATTTCCTTTAAATCTGATAGCAGTCGACGAAGGTACATAACTGAGGAGATAAAGAAGTTAGGAAAAGGAAACATCACAGCTCAAACTTTTACATTTGGTGATCTAACCACTGCTACTAATAACTTCGACCATGAAAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTGTACAAAGGCATCCTTGAAAGCACAAAACAAGTAACAGCTGTGAAGCAACTCGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTTGTGAATTTGATTGGGTATTGTGCTGATGGGGATCAGAGGATCTTGGTTTATGAGTACATGGCTCACGGCTCCTTGGAAGATCATCTTCTTGATATAGCGCCGGATAAGACGCCTCTGGACTGGAAGACGAGGATGAAAATTGCTGAAGGAGCAGCGAAAGGACTTGAATACTTACACGAAACTGCGAATCCTCCTGTGATATATCGCGATTTCAAAGCTTCGAACATATTGTTGGATGAGGAATTCAATCCAAAGCTTTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGATAAATCTCATGTTTCCACTAGAGTGATGGGAACCTATGGTTATTGTGCTCCTGAATATGCACTCACAGGACAGTTAACAACGAAATCAGATGTTTACAGTTTTGGTGTCGTGTTTCTGGAGATAATAACTGGAAGACGAGTTATAGACAATGCGAGACCAACAGCAGAGCAAAACTTAATCACTTGGGCACAGCCTCTTTTCAAGGACAGAAGGAAATTTACACTCATGGCAGATCCAAAGCTAGAAGGAAACTATCCAGTGAAGGCTCTGTATCAAGCTCTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGGGTACACGGCCATTGATCAGTGATGTGGTTACAGCTCTCGAATTTTTAGCTGCAAATAAGGATATCGATGCAGATGTAGATGACGAAGAGCCAGGTTTGATATCGGGAGCAGGTTTGGGTTCAGCTTCTCCTGATAGAAGTAGTAGTAATGGTGATAAAAATGTTGATGTTGAGGGTGAGTGA 1200 42.0 MNCFQCCLTDKKVDRKSLKKSIKEYQDTKALTSFANISFKSDSSRRRYITEEIKKLGKGNITAQTFTFGDLTTATNNFDHENLLGEGGFGRVYKGILESTKQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRILVYEYMAHGSLEDHLLDIAPDKTPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEAGTRPLISDVVTALEFLAANKDIDADVDDEEPGLISGAGLGSASPDRSSSNGDKNVDVEGE 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4887290 4889699 + CmaCh04G009530.1 Cma04g00953 292034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00953 399 MobiDBLite consensus disorder prediction 365 399 - -
Cma04g00953 399 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00953 399 Gene3D Phosphorylase Kinase; domain 1 38 154 - -
Cma04g00953 399 SUPERFAMILY Protein kinase-like (PK-like) 64 361 IPR011009 -
Cma04g00953 399 CDD STKc_IRAK 84 353 - -
Cma04g00953 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cma04g00953 399 Gene3D Transferase(Phosphotransferase) domain 1 155 371 - -
Cma04g00953 399 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Cma04g00953 399 Pfam Protein kinase domain 80 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00953 399 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 3 369 - -
Cma04g00953 399 PANTHER OS07G0668900 PROTEIN 3 369 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00953 Cma16g00856 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00948 Cma-Chr1:6020324 Cma04g00953 Cma-Chr4:4887290 0 dispersed
Cma04g00953 Cma-Chr4:4887290 Cma16g00856 Cma-Chr16:5061478 0 dispersed
Cma19g01016 Cma-Chr19:8728616 Cma04g00953 Cma-Chr4:4887290 5.25E-105 dispersed
Cma04g00953 Cma-Chr4:4887290 Cma17g01421 Cma-Chr17:9377727 5.41E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68489 PF00069 Pkinase 4.10E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00953 - - csv:101212756 726.087