Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00958 ATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTTTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCGGCATTTCTACCGATACTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCAGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTTAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCATTGCCTTTGGATGCCAAGGTTGAAATTGAGTGCATCGCTACACTTTGA 564 47.16 MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTDTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIECIATL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4914594 4918334 - CmaCh04G009580.1 Cma04g00958 292039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00958 187 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 1 187 IPR006175 -
Cma04g00958 187 ProSitePatterns Uncharacterized protein family UPF0076 signature. 163 181 IPR019897 -
Cma04g00958 187 SUPERFAMILY YjgF-like 64 187 IPR035959 -
Cma04g00958 187 TIGRFAM TIGR00004: reactive intermediate/imine deaminase 64 186 IPR006056 -
Cma04g00958 187 PANTHER PERCHLORIC ACID SOLUBLE TRANSLATION INHIBITOR-LIKE PROTEIN 1 187 - -
Cma04g00958 187 CDD YjgF_YER057c_UK114_family 79 185 - -
Cma04g00958 187 Pfam Endoribonuclease L-PSP 70 186 IPR006175 -
Cma04g00958 187 Gene3D - 59 186 IPR035959 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00958 K09022 ridA, tdcF, RIDA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - csv:101215404 336.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00958 Cma16g00866 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00958 Cma-Chr4:4914594 Cma12g00963 Cma-Chr12:7567776 3.56E-06 dispersed
Cma16g00866 Cma-Chr16:5212617 Cma04g00958 Cma-Chr4:4914594 3.50E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g511 . . . . Bpe09g00176 . Bma10g00548 . Cmo16g00896 Cmo04g01031 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1144 Cone15ag1162 . Csa03g00508 . . Blo07g00905 Blo10g00832 Bda05g00722 Bda12g00909 . . . . . . . Cma04g00958 Cma16g00866 Car04g00897 Car16g00843 . Cpe01g00870 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008766 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00958 Cma_Chr04 FPKM 29.513752 30.289845 77.082542 80.45192 85.805977 87.374725 84.058311 64.285439 62.43869 69.092415