Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00962 ATGGAAGAAACCCACAATTCCCACCCTCCAATCCTCAAACTCCTCGACGTCTCTCTGCGACTCCTCTCCGTTCCTCTCACCATCGCTTCAATCGGCCTCACCGTCACCAACCGCCAGGACAATCCCGATTACGGCACCTTGGAGTTTCACAATCTCAGCGGCCTCAAGTACATGGTCTGCATATCCGCCATCGCCGCCGCGTACGCTTTGTTCGCCGCCGCGTTCTCCTGGATCCGATGCTTCGCCGCCAAGGCTTGGGTCTTCTTCGTTTCCGACCAGATTGTGGCTTATTTGATGGTGACATCGGTGGCGGCGGTGGGGGAGATTCTGTATTTGGCTTACTACGGAGACAGGGAGGTTTCGTGGAGTGAGGCTTACAGCACATATGGGAAGTTCTGCGACAAGATGAAGATGGCTCTGGTTTTTCAAGCTTTGGGATTTGGGTGTTTCTTTGTGGTGGCTGTGGTTTCTGCTTTTAGGGCTTTTAGTATCTTCGACCCTCCTCTTCCTTCTCATCACCTTCAACACCAAAGCAATTAG 540 52.78 MEETHNSHPPILKLLDVSLRLLSVPLTIASIGLTVTNRQDNPDYGTLEFHNLSGLKYMVCISAIAAAYALFAAAFSWIRCFAAKAWVFFVSDQIVAYLMVTSVAAVGEILYLAYYGDREVSWSEAYSTYGKFCDKMKMALVFQALGFGCFFVVAVVSAFRAFSIFDPPLPSHHLQHQSN 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4937653 4938773 + CmaCh04G009620.1 Cma04g00962 292043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00962 179 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 17 160 IPR006459 -
Cma04g00962 179 PANTHER CASP-LIKE PROTEIN 2D1 6 175 - -
Cma04g00962 179 Pfam Casparian strip membrane protein domain 13 148 IPR006702 -
Cma04g00962 179 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 6 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00962 - - - cmax:111482956 322.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00635 Cma-Chr4:3255677 Cma04g00962 Cma-Chr4:4937653 6.25E-21 dispersed
Cma04g00962 Cma-Chr4:4937653 Cma10g00033 Cma-Chr10:118583 8.41E-09 dispersed
Cma04g00962 Cma-Chr4:4937653 Cma05g00667 Cma-Chr5:3429483 1.27E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g524 . Blo03g01455 Bda07g00368 . . . . . . Cmo04g01038 . . . . . . . . . . . . . . Cla10g00496 Cam10g0488 Cec10g0506 Cco10g0491 Clacu10g0508 Cmu10g1335 Cre10g0740 . . Cone14ag1150 Cone15ag1166 . Csa03g00502 . Cme06g02240 . . . . Bpe11g00553 . . . Sed04g0718 . . Cma04g00962 . Car04g00903 . . Cpe01g00875 Bhi11g00603 Tan01g1718 Cmetu06g2809 . . . . . . . . . . . Lsi05g00584 . Chy06g01824 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013165 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 0 0 1 1 0 1 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00962 Cma_Chr04 FPKM 35.0 39.172211 32.945259 28.142284 21.350021 19.839453 20.480251 42.816273 55.365417 53.552219