Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00965 ATGAACCTGAGCATTGTTCTTTTCTGGATCATAGCGATCTCGATCCATATCGTTGGAGTTGTTTCTAAAACCAAAGCGCCAGATGTTTCTGCACTGAACGTGATGTACAGTAGTTTAAATTCACCATCACAATTGTCTGGTTGGGGTTCAAGTGGGGGTGACCCATGTGGCGACTCTTGGGAAGGGATCCAATGCTCAGGAACATCCGTCACTGAAATACATTTATCAGACTTTGGACTAAGTGGATCAATGGGTTACCAGCTCTCAAATTTGGTTTCTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGCGATATCCCGTATCAGCTTCCTCCTAATGCCGTTCATGTCGATCTTTCTGAAAACAGCTTCACTGGAAGCGTGCCTTATTCGATTTCTCAAATGGGCGATCTTAATTTTTTAAATCTTGCTCATAATCAGCTTAGTAACCAATTGAGTGACATGTTTGGCAAGCTTCCTAAACTTAAAAGTCTGGATCTCTCATACAACTCAATCTCAGGAACCTTACCTCAAAGTTTTAACAAGCTTTCAAGCCTCACCACACTGCACCTTCAAGAGAATCAATTTAAAGGTTCAATTAATGTTCTTGCTGACCTTCCACTTGATGATCTGAATGTCGCAAATAACCAATTCACCGGATGGATTCCTGCGACTCTTGAGGACATTAACAATTTGGAAACTGTAGGAAATTCTTGGTCAACTGGGCCAGCTCCTCCTCCACCACCCGGCACAGCGGCCGCTAACAAAAAATCCAACAAAGACAAGTCGAGCAACAAATCCTCAAGCATCAGCGGCCTGGTCATAGCTGGAATAGCGATGGGGGTTTTGGTATTAATCGCCATTCTCATTGCATTGATCTCAAGAAGGTCTCCTCCTTCCCATTATCTTGATGAAGACACAAACCCACACAGATCCTTCACTCCACTTACATCCCAAGAACTCACCAAAGGTTTGCACAATGGAGATGATAGAAAATCAATAAACTCAGATACCTCTGTTGACATAAAGGCTCTTCAGAATGCTTCGAGTGGGCTTATTAGGCCTCCTCCGCCCTTTGATCCTGTGCAGGCCTTCAGTGATAGTCAGTTTGCCAGCCGTCTCAACTCCAGAAGAAGCACTTCTGTTCGTGCCATTTCTTACTCCTTGGTTGATTTGCAAGCTGCTACAGCTAATTTTTCGACTGCTCGCCTTCTTGGTGAGGGCACTATTGGACGTGTCTATAAGGCCAAGTATGGAGATGGAAAGGTTTTAGCTGTGAAGAAGATAGATTCATCAGTTTTTGAAGGAAGAAGAAAAGAAGAATTTTCAGAAGTAGTTGCAATCATCTCAAAGCTTCGCCACACAAACCTTACAGAAGTGGTTGGTTTTTGTTCAGAACAGGGACATAACATGCTGCTTTACCAATATTTCATGAATGGTTCACTTCATGAGTTTCTACATATGTCTGATGACTTCAGTAAACCACTCACCTGGAATACTCGAGTCAGAATCGCTTTGGGGACAGCCCGAGCTCTTGAGTACCTTCATGAAGTTTGCTCACCGTCTATAATTCACATGAATATCAAGTCCTCGAATATATTGCTCGATACCGATCTCAACCCTCGAATATCAGACTATGGTTTGGCCACTTTTTATAAGAATAGAAGGGAAGTCCCTGGAGTTGGATATGATGCTCCAGAATGCAAAAAGGGTTCAAGTTATACAATGAAGAGTGACATTTACAGTGTGGGAGTGGTGATGTTGGAATTGTTGACAGGGCGGATGCCATTTGACTCTTCGAAGGCAAGGGCGGAGCAAAGTCTAGTCTGGTGGGCTACCCCACAGCTGCACGACATAGATGCGTTGGACAAAATGGTGGATCCAGCATTGAGAGGGTTATATCCACCAAAATCAGTGTCTAGATTTGCAGATATCATTTCCCTTTGTGTTCAATCAGAGCCTGAATTTCGGCCTCCCTCGTCGGAGGTGGTGCAAGCCTTGGTAACTTTGGTTCAACGATCCAGTATGAATGTGAGAGATGATCTTGGAAGCTCCCGACGAGTGGATGATTATGACTATTAA 2088 43.63 MNLSIVLFWIIAISIHIVGVVSKTKAPDVSALNVMYSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGTSVTEIHLSDFGLSGSMGYQLSNLVSVTYFDLSKNNLNGDIPYQLPPNAVHVDLSENSFTGSVPYSISQMGDLNFLNLAHNQLSNQLSDMFGKLPKLKSLDLSYNSISGTLPQSFNKLSSLTTLHLQENQFKGSINVLADLPLDDLNVANNQFTGWIPATLEDINNLETVGNSWSTGPAPPPPPGTAAANKKSNKDKSSNKSSSISGLVIAGIAMGVLVLIAILIALISRRSPPSHYLDEDTNPHRSFTPLTSQELTKGLHNGDDRKSINSDTSVDIKALQNASSGLIRPPPPFDPVQAFSDSQFASRLNSRRSTSVRAISYSLVDLQAATANFSTARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFEGRRKEEFSEVVAIISKLRHTNLTEVVGFCSEQGHNMLLYQYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDTDLNPRISDYGLATFYKNRREVPGVGYDAPECKKGSSYTMKSDIYSVGVVMLELLTGRMPFDSSKARAEQSLVWWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIISLCVQSEPEFRPPSSEVVQALVTLVQRSSMNVRDDLGSSRRVDDYDY 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4949158 4954436 - CmaCh04G009650.1 Cma04g00965 292046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00965 695 PANTHER OS01G0253100 PROTEIN 19 691 IPR045271 GO:0004714|GO:0006468
Cma04g00965 695 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cma04g00965 695 Gene3D Ribonuclease Inhibitor 25 275 IPR032675 -
Cma04g00965 695 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 691 - -
Cma04g00965 695 SMART LRR_typ_2 91 119 IPR003591 -
Cma04g00965 695 SMART LRR_typ_2 161 184 IPR003591 -
Cma04g00965 695 SMART LRR_typ_2 185 207 IPR003591 -
Cma04g00965 695 SMART LRR_typ_2 137 160 IPR003591 -
Cma04g00965 695 SUPERFAMILY Protein kinase-like (PK-like) 381 669 IPR011009 -
Cma04g00965 695 Gene3D Transferase(Phosphotransferase) domain 1 479 691 - -
Cma04g00965 695 SUPERFAMILY L domain-like 27 236 - -
Cma04g00965 695 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515
Cma04g00965 695 Pfam Protein kinase domain 402 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00965 695 ProSiteProfiles Protein kinase domain profile. 401 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00965 695 MobiDBLite consensus disorder prediction 237 269 - -
Cma04g00965 695 Gene3D Phosphorylase Kinase; domain 1 365 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00022 Cma-Chr1:86530 Cma04g00965 Cma-Chr4:4949158 0 dispersed
Cma04g00965 Cma-Chr4:4949158 Cma14g01226 Cma-Chr14:9734658 0 dispersed
Cma15g01427 Cma-Chr15:9019149 Cma04g00965 Cma-Chr4:4949158 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68491 PF00069 Pkinase 2.80E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00965 - - csv:101209107 1108.2