Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00965 ATGAACCTGAGCATTGTTCTTTTCTGGATCATAGCGATCTCGATCCATATCGTTGGAGTTGTTTCTAAAACCAAAGCGCCAGATGTTTCTGCACTGAACGTGATGTACAGTAGTTTAAATTCACCATCACAATTGTCTGGTTGGGGTTCAAGTGGGGGTGACCCATGTGGCGACTCTTGGGAAGGGATCCAATGCTCAGGAACATCCGTCACTGAAATACATTTATCAGACTTTGGACTAAGTGGATCAATGGGTTACCAGCTCTCAAATTTGGTTTCTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGCGATATCCCGTATCAGCTTCCTCCTAATGCCGTTCATGTCGATCTTTCTGAAAACAGCTTCACTGGAAGCGTGCCTTATTCGATTTCTCAAATGGGCGATCTTAATTTTTTAAATCTTGCTCATAATCAGCTTAGTAACCAATTGAGTGACATGTTTGGCAAGCTTCCTAAACTTAAAAGTCTGGATCTCTCATACAACTCAATCTCAGGAACCTTACCTCAAAGTTTTAACAAGCTTTCAAGCCTCACCACACTGCACCTTCAAGAGAATCAATTTAAAGGTTCAATTAATGTTCTTGCTGACCTTCCACTTGATGATCTGAATGTCGCAAATAACCAATTCACCGGATGGATTCCTGCGACTCTTGAGGACATTAACAATTTGGAAACTGTAGGAAATTCTTGGTCAACTGGGCCAGCTCCTCCTCCACCACCCGGCACAGCGGCCGCTAACAAAAAATCCAACAAAGACAAGTCGAGCAACAAATCCTCAAGCATCAGCGGCCTGGTCATAGCTGGAATAGCGATGGGGGTTTTGGTATTAATCGCCATTCTCATTGCATTGATCTCAAGAAGGTCTCCTCCTTCCCATTATCTTGATGAAGACACAAACCCACACAGATCCTTCACTCCACTTACATCCCAAGAACTCACCAAAGGTTTGCACAATGGAGATGATAGAAAATCAATAAACTCAGATACCTCTGTTGACATAAAGGCTCTTCAGAATGCTTCGAGTGGGCTTATTAGGCCTCCTCCGCCCTTTGATCCTGTGCAGGCCTTCAGTGATAGTCAGTTTGCCAGCCGTCTCAACTCCAGAAGAAGCACTTCTGTTCGTGCCATTTCTTACTCCTTGGTTGATTTGCAAGCTGCTACAGCTAATTTTTCGACTGCTCGCCTTCTTGGTGAGGGCACTATTGGACGTGTCTATAAGGCCAAGTATGGAGATGGAAAGGTTTTAGCTGTGAAGAAGATAGATTCATCAGTTTTTGAAGGAAGAAGAAAAGAAGAATTTTCAGAAGTAGTTGCAATCATCTCAAAGCTTCGCCACACAAACCTTACAGAAGTGGTTGGTTTTTGTTCAGAACAGGGACATAACATGCTGCTTTACCAATATTTCATGAATGGTTCACTTCATGAGTTTCTACATATGTCTGATGACTTCAGTAAACCACTCACCTGGAATACTCGAGTCAGAATCGCTTTGGGGACAGCCCGAGCTCTTGAGTACCTTCATGAAGTTTGCTCACCGTCTATAATTCACATGAATATCAAGTCCTCGAATATATTGCTCGATACCGATCTCAACCCTCGAATATCAGACTATGGTTTGGCCACTTTTTATAAGAATAGAAGGGAAGTCCCTGGAGTTGGATATGATGCTCCAGAATGCAAAAAGGGTTCAAGTTATACAATGAAGAGTGACATTTACAGTGTGGGAGTGGTGATGTTGGAATTGTTGACAGGGCGGATGCCATTTGACTCTTCGAAGGCAAGGGCGGAGCAAAGTCTAGTCTGGTGGGCTACCCCACAGCTGCACGACATAGATGCGTTGGACAAAATGGTGGATCCAGCATTGAGAGGGTTATATCCACCAAAATCAGTGTCTAGATTTGCAGATATCATTTCCCTTTGTGTTCAATCAGAGCCTGAATTTCGGCCTCCCTCGTCGGAGGTGGTGCAAGCCTTGGTAACTTTGGTTCAACGATCCAGTATGAATGTGAGAGATGATCTTGGAAGCTCCCGACGAGTGGATGATTATGACTATTAA 2088 43.63 MNLSIVLFWIIAISIHIVGVVSKTKAPDVSALNVMYSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGTSVTEIHLSDFGLSGSMGYQLSNLVSVTYFDLSKNNLNGDIPYQLPPNAVHVDLSENSFTGSVPYSISQMGDLNFLNLAHNQLSNQLSDMFGKLPKLKSLDLSYNSISGTLPQSFNKLSSLTTLHLQENQFKGSINVLADLPLDDLNVANNQFTGWIPATLEDINNLETVGNSWSTGPAPPPPPGTAAANKKSNKDKSSNKSSSISGLVIAGIAMGVLVLIAILIALISRRSPPSHYLDEDTNPHRSFTPLTSQELTKGLHNGDDRKSINSDTSVDIKALQNASSGLIRPPPPFDPVQAFSDSQFASRLNSRRSTSVRAISYSLVDLQAATANFSTARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFEGRRKEEFSEVVAIISKLRHTNLTEVVGFCSEQGHNMLLYQYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDTDLNPRISDYGLATFYKNRREVPGVGYDAPECKKGSSYTMKSDIYSVGVVMLELLTGRMPFDSSKARAEQSLVWWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIISLCVQSEPEFRPPSSEVVQALVTLVQRSSMNVRDDLGSSRRVDDYDY 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4949158 4954436 - CmaCh04G009650.1 Cma04g00965 292046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00965 695 PANTHER OS01G0253100 PROTEIN 19 691 IPR045271 GO:0004714|GO:0006468
Cma04g00965 695 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cma04g00965 695 Gene3D Ribonuclease Inhibitor 25 275 IPR032675 -
Cma04g00965 695 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 691 - -
Cma04g00965 695 SMART LRR_typ_2 91 119 IPR003591 -
Cma04g00965 695 SMART LRR_typ_2 161 184 IPR003591 -
Cma04g00965 695 SMART LRR_typ_2 185 207 IPR003591 -
Cma04g00965 695 SMART LRR_typ_2 137 160 IPR003591 -
Cma04g00965 695 SUPERFAMILY Protein kinase-like (PK-like) 381 669 IPR011009 -
Cma04g00965 695 Gene3D Transferase(Phosphotransferase) domain 1 479 691 - -
Cma04g00965 695 SUPERFAMILY L domain-like 27 236 - -
Cma04g00965 695 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515
Cma04g00965 695 Pfam Protein kinase domain 402 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00965 695 ProSiteProfiles Protein kinase domain profile. 401 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00965 695 MobiDBLite consensus disorder prediction 237 269 - -
Cma04g00965 695 Gene3D Phosphorylase Kinase; domain 1 365 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00965 - - - csv:101209107 1108.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00022 Cma-Chr1:86530 Cma04g00965 Cma-Chr4:4949158 0 dispersed
Cma04g00965 Cma-Chr4:4949158 Cma14g01226 Cma-Chr14:9734658 0 dispersed
Cma15g01427 Cma-Chr15:9019149 Cma04g00965 Cma-Chr4:4949158 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma18g00568 . 383 676 Strubbelig Receptor Gene Family AT1G11130 54.1 7.4e-86 315.8
Cma13g00416 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.8e-85 313.2
Cma17g00644 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.0e-83 307.8
Cma08g00837 CCT,CST 429 717 Strubbelig Receptor Gene Family AT1G11130 52.9 4.5e-83 306.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma14g01226 . 1 718 Strubbelig Receptor Gene Family AT1G53730 60.1 1.2e-211 733.8
Cma01g00022 CCT 526 1249 Strubbelig Receptor Gene Family AT1G53730 60.6 5.0e-210 728.4
Cma08g00837 CCT,CST 31 730 Strubbelig Receptor Gene Family AT1G53730 59.1 1.6e-179 627.1
Cma17g00644 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.7 1.5e-177 620.5
Cma13g00416 . 4 689 Strubbelig Receptor Gene Family AT1G53730 51.6 6.9e-135 478.8
Cma11g01861 CST 518 810 Strubbelig Receptor Gene Family AT1G53730 56.3 2.9e-88 323.9
Cma14g01226 . 11 713 Strubbelig Receptor Gene Family AT3G14350 51.8 1.8e-180 630.2
Cma01g00022 CCT 536 1253 Strubbelig Receptor Gene Family AT3G14350 50.6 7.5e-179 624.8
Cma08g00837 CCT,CST 39 728 Strubbelig Receptor Gene Family AT3G14350 53.5 7.0e-161 565.1
Cma17g00644 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.0 1.4e-156 550.8
Cma11g01861 CST 517 818 Strubbelig Receptor Gene Family AT3G14350 51.6 1.8e-76 284.6
Cma18g00568 . 332 706 Strubbelig Receptor Gene Family AT4G22130 81.6 2.2e-173 606.3
Cma13g00416 . 344 711 Strubbelig Receptor Gene Family AT4G22130 80.2 4.4e-169 592.0
Cma14g01226 . 402 725 Strubbelig Receptor Gene Family AT4G22130 63.2 2.1e-118 423.7
Cma01g00022 CCT 943 1265 Strubbelig Receptor Gene Family AT4G22130 63.4 4.6e-118 422.5
Cma17g00644 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.9 6.0e-118 422.2
Cma08g00837 CCT,CST 423 732 Strubbelig Receptor Gene Family AT4G22130 66.0 3.9e-117 419.5
Cma11g01861 CST 486 821 Strubbelig Receptor Gene Family AT4G22130 55.6 4.8e-107 386.0
Cma19g00972 CST 459 754 Strubbelig Receptor Gene Family AT4G22130 60.9 1.5e-105 380.9
Cma04g00965 . 378 695 Strubbelig Receptor Gene Family AT4G22130 55.4 4.3e-100 362.8
Cma03g00479 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.5 1.4e-98 357.8
Cma14g00431 . 404 726 Strubbelig Receptor Gene Family AT4G22130 52.0 2.5e-92 337.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68491 PF00069 Pkinase 2.80E-42 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00965 Cma_Chr04 FPKM 1.021251 1.672951 1.296445 1.562713 1.446859 1.734741 1.931613 1.666649 1.567339 1.429853