Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00969 ATGAGGACTGGGAACCGAAAGAGGAAGCTAAGGCTAAGCAAGATCTATTCATTTGCTTGTGGAAGAACTTCATTGAAAGATGAAGATCATTCACAAATTGGAATGCTCGGGTTCTCCCGGGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGGCTGGAATGCGTAATTATGTTAACAACTCTATCAGTTCTACAAAGTACACACCTATCACTTTTGTGCCCAAGTCGCTGTTTGAGCAGTTCAGGAGGGTGGCTAATTTTTACTTCTTAATTGCTGGTTTAGTAGCCTTCACTCCTCTTGCTCCTTATACTGCTGTCAGTGCAATTGTCCCTCTTATTGCAGTCATTATTGCGACAATGGTTAAAGAAGGTGTTGAAGATTGGAGACGAAAAGCACAGGATATTGAGGTGAATAATAGAATGGTTAAAGTTCATCAAGGCAATGGAGTCTTTGATAATACTGAATGGAAAACTTTGAGGGTTGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTGATTTCATCCTGCTATGAGGATGGAATCTGTTATGTAGAAATGATGAACCTTGATGGGGAAACAAATCTAAAGGTAAAGCAAGCACTCGATACAACTGCATTTGCACGTGAGGATTCTAACTTTTTTGACTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGGAGTATGGACTTTGAAGATCAAAAATATCCACTTTCTCCACAAAATCTTCTCCTGAGAGACTCCAAACTCCGAAACACAGAATATATATATGGGGCTGTTGTCTTTACTGGCCATGATTCAAAGGTTATTCAAAATTCTACTGATCCACCTTCTAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATTATATATCTGTTGTTTAGCTGTCTATTCATGCTGGCCTTCATTGGATCTATAATCTTCGGAGTTATGACTAAAGATGATCTTAAAAATGGGAGGACAAAGAGATGGTACCTTAGGCCAGATGATTCTACTATTTACTTTGATCCCAAAAATGCACCAGCTGCTGCAATTTTCCACTTTCTGTCAGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATAGAAGTTGTCAAAGTTCTTCAGAGTATCTTTATCAATCAAGACATTCACATGTATTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACCGGAACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGAAGCGGAGTCACTGAAACTGAGAGAGCTATGGAAGGCAGAAACGGCATGCCAATGCTTTACGGAAATGGCAATGGAAACACCTATAAGCACAATGAGGATGCTACAGATACAACTCCCTCTGTCAAAGGCTTTAATTTTAAGGACAATAGGATTATGAACGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCCACTTGTCAAACAGCTATTCCAGATGTTGATGAAAACACAGGCAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTCGAATTCTTCCAGAGGACACAGACAAGTATATCGATTCGTGAACTCGATCCTAGGTCTGGAAGGAAGGTTGAAAGGTCATATAAGCTTTTAAATGTTCTGGAGTTTAATAGCGCCAGGAAGAGGATGTCTGTTATAATAAGAGATGAAGAAGGGAAAGTACTATTACTATGCAAAGGTGCTGACAGTGTCATGTTTGAGAGGCTTGCCAAGAATGCTAGTAAATTTGAAGAGAAAACGAAGGACCATATCAATGAGTACGCTGATGCAGGGCTAAGGACCTTGGTACTTGCTTATCGTGAACTTGATGAGGAGGAATACAAATTATTTGATAGGCAATTCAATGAAGCTAAGAATTCAGTTAGTGCAGAGAGGGATTCATTGATTGATAAAGTAACAGATCGCATTGAAAGGGATTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGAGTCCCTGAATGCATAGACAAACTTGCCCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCGGTCAATATTGGTTTTGCCTGCAGTTTGCTTAGACAAGGAATGAAACAGATTATTATATCTCTGGAAACACCAGAAATTCAGGCCTTAGAAAGGACAGGAGAGAAGGATATGATCAGTAAGGCATCAAAAGAAAGTGTCATCCACAAGATAACTCGGGCAAGGTCTCAGCTCACTGCATCAAGTGGAAGCGCAGAGGCTTATGCATTGATAATAGATGGGAAGTCACTTACTTATGCTCTAGAGGATGATGTGAAGGATGCATTCCTTGAGCTCGCAATTGGGTGTGCATCTGTTATTTGCTGTCGCTCATCACCAAAGCAGAAAGCAATGGTCACTCGATTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGCGCAAATGATGTTGGAATGCTTCAGGAAGCAGATATTGGCATTGGAATTAGTGGTGCCGAAGGAATGCAGGCTGTCATGTCGAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTACTACTTGTACATGGACATTGGTGCTACAGGAAATTGTCATCAATGATATGCTACTTTTTCTACAAGAATTTTACCTTTGGTTTTACGCTTTTCTTATACGAGGCATACACTTCATTCTCTGCACAACCTGCATATAACGATTGGTTTATGTCACTCTACAATGTTGTGTTCTCCGCACTGCCAGTTGTGGCTCTTGGGGTGTTTGACCAGGACGTGTCTGCAAGATATTGCCTTAAGTTTCCTATGTTGTACCAGCAAGGTGTTCAGAATGTCCTCTTCAGCTGGGCCCGGATACTCAGCTGGATGTTTAATGGTTTGTGCAGTGCGTTGATCATTTTCTTTTTCTGCACAAATGGAATGAAGCATCAGGCATTTAACCCCGATGGGAAAACTGTGGGGAGAGATATCCTTGGAACGACAATGCTGTCATGTGTTGTTTGGGTCGTCAACTTGCAGATGGCACTCTCTGTTAGCTACTTCACCTTGTTACAACATATTTTCATCTGGGCTTCAATCTTTATCTGGTACCTCTTTTTGATGATATATGGAGCCTTCCCTGCCAACATTTCAGGAAATGCATATCGTGTGTTCCTCGAAGCCCTTGCTCCTGCCGGGTCTTATTGGGTTCTGCTGATCTTTGTGGTGCTCTCTACTCTCATTCCATTCTTTGTGTACTCAGCATTACAGGTGAATTTCTTTCCGATGTACCATGAAAAAATACAGTGGATCAGGCACAATGGTAAGGGTCAGATAGACAATCCTGAGTTTGTCAATATGGTCAGGCAAAGCTCGTTGAAACCAGCAACTGTCGGCTTCACTGCTCGTTTGGCAGCCAAAATAAGAAGAGATAATTCATAG 3591 41.19 MRTGNRKRKLRLSKIYSFACGRTSLKDEDHSQIGMLGFSRVVFCNDPDCLEAGMRNYVNNSISSTKYTPITFVPKSLFEQFRRVANFYFLIAGLVAFTPLAPYTAVSAIVPLIAVIIATMVKEGVEDWRRKAQDIEVNNRMVKVHQGNGVFDNTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVEMMNLDGETNLKVKQALDTTAFAREDSNFFDFKATIKCEDPNANLYTFVGSMDFEDQKYPLSPQNLLLRDSKLRNTEYIYGAVVFTGHDSKVIQNSTDPPSKRSKVEKKMDKIIYLLFSCLFMLAFIGSIIFGVMTKDDLKNGRTKRWYLRPDDSTIYFDPKNAPAAAIFHFLSALMLYNYFIPISLYVSIEVVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGVTETERAMEGRNGMPMLYGNGNGNTYKHNEDATDTTPSVKGFNFKDNRIMNGNWVNEPHADVIQKFFRLLATCQTAIPDVDENTGKVSYEAESPDEAAFVIAAREIGFEFFQRTQTSISIRELDPRSGRKVERSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNASKFEEKTKDHINEYADAGLRTLVLAYRELDEEEYKLFDRQFNEAKNSVSAERDSLIDKVTDRIERDLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAVNIGFACSLLRQGMKQIIISLETPEIQALERTGEKDMISKASKESVIHKITRARSQLTASSGSAEAYALIIDGKSLTYALEDDVKDAFLELAIGCASVICCRSSPKQKAMVTRLVKLATGKTTLAIGDGANDVGMLQEADIGIGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRKLSSMICYFFYKNFTFGFTLFLYEAYTSFSAQPAYNDWFMSLYNVVFSALPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWARILSWMFNGLCSALIIFFFCTNGMKHQAFNPDGKTVGRDILGTTMLSCVVWVVNLQMALSVSYFTLLQHIFIWASIFIWYLFLMIYGAFPANISGNAYRVFLEALAPAGSYWVLLIFVVLSTLIPFFVYSALQVNFFPMYHEKIQWIRHNGKGQIDNPEFVNMVRQSSLKPATVGFTARLAAKIRRDNS 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4960347 4967577 - CmaCh04G009690.1 Cma04g00969 292050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00969 1196 Pfam Phospholipid-translocating ATPase N-terminal 42 108 IPR032631 -
Cma04g00969 1196 SUPERFAMILY HAD-like 421 921 IPR036412 -
Cma04g00969 1196 CDD P-type_ATPase_APLT_Dnf-like 59 1027 - -
Cma04g00969 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 833 951 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma04g00969 1196 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cma04g00969 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 433 671 IPR023299 GO:0000166
Cma04g00969 1196 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Cma04g00969 1196 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Cma04g00969 1196 SFLD p-type atpase 408 918 IPR044492 -
Cma04g00969 1196 Gene3D - 699 907 IPR023214 -
Cma04g00969 1196 Pfam E1-E2 ATPase 139 384 - -
Cma04g00969 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 895 1145 IPR032630 -
Cma04g00969 1196 Pfam Cation transport ATPase (P-type) 536 629 - -
Cma04g00969 1196 Gene3D - 549 687 IPR023299 GO:0000166
Cma04g00969 1196 SFLD C1.7: P-type atpase like 408 918 - -
Cma04g00969 1196 Gene3D - 113 288 - -
Cma04g00969 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1144 IPR023298 -
Cma04g00969 1196 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1152 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma04g00969 1196 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 5 1193 - -
Cma04g00969 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Cma04g00969 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 5 1193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00969 Cma-Chr4:4960347 Cma18g01061 Cma-Chr18:8794419 0 dispersed
Cma15g01422 Cma-Chr15:8999195 Cma04g00969 Cma-Chr4:4960347 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00969 K01530 - csv:101205800 2231.45