Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00971 ATGGCTGCATCTTCTTCTTCCTCACTTCCAGTTTATGGCGTTGGAGAAGAAGCAACTCCCCAGATGAGGCCTCCCTCTAATTCTTCCACTAAGAAAAAAAGAAACCAACCAGGAACTCCAAGCAAGTATTACCCAGATGCGGAGGTCATAGCCTTGAGTCCCAAGACCCTAATGGCTACAAACAGATTCATCTGCGAAGTTTGCAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCATAGACGAGGTCACAACTTGCCTTGGAAGTTAAAGCAAAAATCCACTAAAGACCCTAAGCGCAAGGTTTACTTATGTCCTGAACCCACATGCGTCCACCACCACCCTTCAAGGGCGCTTGGCGACTTAACCGGCATCAAAAAACACTACTCTAGAAAACATGGCGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGCGCTACGCCGTTCAGTCCGACTGGAAAGCTCACTCCAAAACGTGCGGTACTCGCGAGTATCGCTGCGATTGTGGCACTCTCTTCTCCAGACGAGATAGTTTTATTACTCATAGAGCTTTTTGTGATGCATTGGCTCAAGAGAGTGCTAGGCATCCTCCAAGTATTGGAAGGCATTTATATGGAGCACAAGACCATCCCAATATCATTAACCAATCTGCTCCTGGACACTTTACTCATCTCCTTCCTTCATCCATGGGGTCTTCCTTTCGGCCGATGTCGGCGTCGGGGTTCTTCTTGACGGAGCAGAATAATCAGAGTAGCTTCCATGATGATCAGCCAAACCAATCCCAACAAGGGTTCTTTGGAAACAAGGGGTTTCATGGGGTGATGCAATTCCCTGAGATCCAATCCCATACCAATAATTGTGCTACCAATGTCTTCAATTTGGGGTTCATTCCAAATTCTACTGCCGATGGTACTACCAATTTGAACAATAACAATGACACCAACTCTAATAGTACCAATTTGAATCAATTCAGTGCCACAAACAATGGCAACAATGAAGCTGCTGCCTCTAACATTTTCGCGGTAATCGGCGATCAGATGAGTTCAGCTGCACTCCCATCTCTCTACAGCAATGCCTTGGGCGTCGGTGGTGGAGGCGGTAGTGGCATCGGTGGATCGTTCCCACATATGTCGGCGACAGCGCTTCTTCAGAAGGCAGCTCAATTGGGTTCAACGACATCGAGTAGCAACACAACATCAACGTTGCTAAGGTCGTTTGGAAGCTCCTCGAACTCAGGGGGGAAAGCATCAGACAGAACGCTTTTCCCATTGAGTTATGGAGGAGTAACATTTGGGGAACATGAGAGCAATCTTCAGGATATGATGAACTCATTTGAGAGCGGGAGCTCGGGAAGTGGGATGTTCGGGAGCGGGATGAACTCATTTGGTGGATTGGAGTGCAGCAGTAGTAGAAGCAATATGGAAACGTTGGAGGATCCGAAGTTACAACAGGATGTAAGGGGAGTGAGGATGGGAGGGACAGATAGGTTAACAAGAGACTTCCTAGGCGTTGGACAGATTGTAAGACGTATGAGCGGGGGCGGTGGCGGCGGTGGCGGCGGCGGTTATTCACAGAAACAAGGGGCGGAGGGGATTGTTTTGGAGGGAAATGAGAGGAATTCAGCGCCGTCAAGTCAAGGTTTTGGTGGTGGAAATGGAAACTACCAGTGA 1674 47.97 MAASSSSSLPVYGVGEEATPQMRPPSNSSTKKKRNQPGTPSKYYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKDPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPSIGRHLYGAQDHPNIINQSAPGHFTHLLPSSMGSSFRPMSASGFFLTEQNNQSSFHDDQPNQSQQGFFGNKGFHGVMQFPEIQSHTNNCATNVFNLGFIPNSTADGTTNLNNNNDTNSNSTNLNQFSATNNGNNEAAASNIFAVIGDQMSSAALPSLYSNALGVGGGGGSGIGGSFPHMSATALLQKAAQLGSTTSSSNTTSTLLRSFGSSSNSGGKASDRTLFPLSYGGVTFGEHESNLQDMMNSFESGSSGSGMFGSGMNSFGGLECSSSRSNMETLEDPKLQQDVRGVRMGGTDRLTRDFLGVGQIVRRMSGGGGGGGGGGYSQKQGAEGIVLEGNERNSAPSSQGFGGGNGNYQ 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4993365 4995838 - CmaCh04G009710.1 Cma04g00971 292052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00971 557 Gene3D Classic Zinc Finger 45 111 - -
Cma04g00971 557 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 18 515 - -
Cma04g00971 557 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Cma04g00971 557 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cma04g00971 557 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cma04g00971 557 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Cma04g00971 557 MobiDBLite consensus disorder prediction 1 46 - -
Cma04g00971 557 MobiDBLite consensus disorder prediction 539 557 - -
Cma04g00971 557 SMART c2h2final6 139 159 IPR013087 -
Cma04g00971 557 SMART c2h2final6 104 134 IPR013087 -
Cma04g00971 557 SMART c2h2final6 63 85 IPR013087 -
Cma04g00971 557 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 515 - -
Cma04g00971 557 MobiDBLite consensus disorder prediction 513 557 - -
Cma04g00971 557 MobiDBLite consensus disorder prediction 21 37 - -
Cma04g00971 557 Gene3D Classic Zinc Finger 113 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00971 Cma-Chr4:4993365 Cma18g00661 Cma-Chr18:6056044 0 dispersed
Cma04g00971 Cma-Chr4:4993365 Cma14g00204 Cma-Chr14:883176 1.23E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34826 PF12171 zf-C2H2_jaz 3.40E-05 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00971 K25870 - csv:101219959 735.717