Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00971 | ATGGCTGCATCTTCTTCTTCCTCACTTCCAGTTTATGGCGTTGGAGAAGAAGCAACTCCCCAGATGAGGCCTCCCTCTAATTCTTCCACTAAGAAAAAAAGAAACCAACCAGGAACTCCAAGCAAGTATTACCCAGATGCGGAGGTCATAGCCTTGAGTCCCAAGACCCTAATGGCTACAAACAGATTCATCTGCGAAGTTTGCAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCATAGACGAGGTCACAACTTGCCTTGGAAGTTAAAGCAAAAATCCACTAAAGACCCTAAGCGCAAGGTTTACTTATGTCCTGAACCCACATGCGTCCACCACCACCCTTCAAGGGCGCTTGGCGACTTAACCGGCATCAAAAAACACTACTCTAGAAAACATGGCGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGCGCTACGCCGTTCAGTCCGACTGGAAAGCTCACTCCAAAACGTGCGGTACTCGCGAGTATCGCTGCGATTGTGGCACTCTCTTCTCCAGACGAGATAGTTTTATTACTCATAGAGCTTTTTGTGATGCATTGGCTCAAGAGAGTGCTAGGCATCCTCCAAGTATTGGAAGGCATTTATATGGAGCACAAGACCATCCCAATATCATTAACCAATCTGCTCCTGGACACTTTACTCATCTCCTTCCTTCATCCATGGGGTCTTCCTTTCGGCCGATGTCGGCGTCGGGGTTCTTCTTGACGGAGCAGAATAATCAGAGTAGCTTCCATGATGATCAGCCAAACCAATCCCAACAAGGGTTCTTTGGAAACAAGGGGTTTCATGGGGTGATGCAATTCCCTGAGATCCAATCCCATACCAATAATTGTGCTACCAATGTCTTCAATTTGGGGTTCATTCCAAATTCTACTGCCGATGGTACTACCAATTTGAACAATAACAATGACACCAACTCTAATAGTACCAATTTGAATCAATTCAGTGCCACAAACAATGGCAACAATGAAGCTGCTGCCTCTAACATTTTCGCGGTAATCGGCGATCAGATGAGTTCAGCTGCACTCCCATCTCTCTACAGCAATGCCTTGGGCGTCGGTGGTGGAGGCGGTAGTGGCATCGGTGGATCGTTCCCACATATGTCGGCGACAGCGCTTCTTCAGAAGGCAGCTCAATTGGGTTCAACGACATCGAGTAGCAACACAACATCAACGTTGCTAAGGTCGTTTGGAAGCTCCTCGAACTCAGGGGGGAAAGCATCAGACAGAACGCTTTTCCCATTGAGTTATGGAGGAGTAACATTTGGGGAACATGAGAGCAATCTTCAGGATATGATGAACTCATTTGAGAGCGGGAGCTCGGGAAGTGGGATGTTCGGGAGCGGGATGAACTCATTTGGTGGATTGGAGTGCAGCAGTAGTAGAAGCAATATGGAAACGTTGGAGGATCCGAAGTTACAACAGGATGTAAGGGGAGTGAGGATGGGAGGGACAGATAGGTTAACAAGAGACTTCCTAGGCGTTGGACAGATTGTAAGACGTATGAGCGGGGGCGGTGGCGGCGGTGGCGGCGGCGGTTATTCACAGAAACAAGGGGCGGAGGGGATTGTTTTGGAGGGAAATGAGAGGAATTCAGCGCCGTCAAGTCAAGGTTTTGGTGGTGGAAATGGAAACTACCAGTGA | 1674 | 47.97 | MAASSSSSLPVYGVGEEATPQMRPPSNSSTKKKRNQPGTPSKYYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKDPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPSIGRHLYGAQDHPNIINQSAPGHFTHLLPSSMGSSFRPMSASGFFLTEQNNQSSFHDDQPNQSQQGFFGNKGFHGVMQFPEIQSHTNNCATNVFNLGFIPNSTADGTTNLNNNNDTNSNSTNLNQFSATNNGNNEAAASNIFAVIGDQMSSAALPSLYSNALGVGGGGGSGIGGSFPHMSATALLQKAAQLGSTTSSSNTTSTLLRSFGSSSNSGGKASDRTLFPLSYGGVTFGEHESNLQDMMNSFESGSSGSGMFGSGMNSFGGLECSSSRSNMETLEDPKLQQDVRGVRMGGTDRLTRDFLGVGQIVRRMSGGGGGGGGGGYSQKQGAEGIVLEGNERNSAPSSQGFGGGNGNYQ | 557 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4993365 | 4995838 | - | CmaCh04G009710.1 | Cma04g00971 | 292052 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00971 | 557 | Gene3D | Classic Zinc Finger | 45 | 111 | - | - | |
Cma04g00971 | 557 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 18 | 515 | - | - | |
Cma04g00971 | 557 | Pfam | Zinc-finger double-stranded RNA-binding | 63 | 85 | IPR022755 | - | |
Cma04g00971 | 557 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
Cma04g00971 | 557 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Cma04g00971 | 557 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 159 | IPR036236 | - | |
Cma04g00971 | 557 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cma04g00971 | 557 | MobiDBLite | consensus disorder prediction | 539 | 557 | - | - | |
Cma04g00971 | 557 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
Cma04g00971 | 557 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
Cma04g00971 | 557 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
Cma04g00971 | 557 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 515 | - | - | |
Cma04g00971 | 557 | MobiDBLite | consensus disorder prediction | 513 | 557 | - | - | |
Cma04g00971 | 557 | MobiDBLite | consensus disorder prediction | 21 | 37 | - | - | |
Cma04g00971 | 557 | Gene3D | Classic Zinc Finger | 113 | 196 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00971 | Cma-Chr4:4993365 | Cma18g00661 | Cma-Chr18:6056044 | 0 | dispersed | |
Cma04g00971 | Cma-Chr4:4993365 | Cma14g00204 | Cma-Chr14:883176 | 1.23E-108 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34826 | PF12171 | zf-C2H2_jaz | 3.40E-05 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00971 | K25870 | - | csv:101219959 | 735.717 |