Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00975 | ATGTCGCGGAAGGGTTTGATGGAACAAGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCACTTTCTCCTGAAGTTATATCTCGTCAGGCTACAATTAATATTGGTACTATTGGTCACGTGGCACATGGGAAGTCTACCGTTGTAAAAGCAATTTCAGGAGTCCAGACTGTACGTTTTAAGAATGAGCTGGAGCGTAACATTACCATTAAGCTGGGGTATGCCAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGGCCTATGAGCTACAAGGCGTATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCCTGGATTTGAAAATTGCAGAATGAAACTATTGCGACATGTATCCTTTGTCGACTGCCCGGGTCACGATATTCTTATGGCTACCATGCTTAACGGAGCAGCTATTATGGATGGAGCATTGCTTCTGATTGCTGCCAATGAAAGCTGCCCTCAACCTCAAACTTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAGGAAAATGTGGCAATCAATCAACATGAAGCTATTCAAAAATTTATTCAGGGAACCGTTGCTGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTCAAGTATAATATTGATGTTGTTTGCGAGTATATAGTGAAAAAAATTCCAATTCCAGAAAGGAACTTCGTCTCACCTCCTAATATGATCGTGATTCGTTCTTTTGATGTCAACAAACCCGGATTTGAAGTTGATGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCAGGGATTGTTGTTAAGGATGAAAGTGGTAACATTAAGTGCACTCCAATATACTCGAGGATTGTTTCATTGTATGCGGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTCATTGGGGTTGGCACAACTATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGTCAGGTTCTTGGGGAAGTTGGTTCACTTCCTGATGTTTTTGTTGAGCTAGAGGTAAACTTTTTCCTTTTGCGGCGGCTCCTGGGTGTCAGGACAAAAGGATCAGAAAGGCAGGGAAAAGTATCAAAGCTAGCCAAGGGGGAGATTCTAATGTTGAACATAGGATCCATGTCGACGGGAGCTAGAGTACTTGCAGTAAAGAACGATTTAGCAAAACTGCAGCTTACTTCCCCTGTTTGCACCAGCAAGGGGGAGAAGATTGCTCTAAGTCGTCGGGTCGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAAGTACTCTCGACGTCCCTCCCTGCCCCATTTGA | 1395 | 43.66 | MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMSYKAYGSGKEDSPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGSTLDVPPCPI | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5014292 | 5019268 | - | CmaCh04G009750.1 | Cma04g00975 | 292056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00975 | 464 | Pfam | Elongation factor Tu GTP binding domain | 32 | 236 | IPR000795 | GO:0003924|GO:0005525 | |
Cma04g00975 | 464 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 30 | 239 | IPR000795 | GO:0003924|GO:0005525 | |
Cma04g00975 | 464 | CDD | eIF2_gamma_II | 241 | 354 | IPR044127 | GO:0000049 | |
Cma04g00975 | 464 | Gene3D | - | 30 | 240 | IPR027417 | - | |
Cma04g00975 | 464 | Gene3D | Translation factors | 242 | 356 | - | - | |
Cma04g00975 | 464 | Gene3D | Translation factors | 357 | 456 | - | - | |
Cma04g00975 | 464 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 | 1 | 463 | - | - | |
Cma04g00975 | 464 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 355 | 452 | IPR009001 | - | |
Cma04g00975 | 464 | Pfam | Initiation factor eIF2 gamma, C terminal | 362 | 451 | IPR015256 | - | |
Cma04g00975 | 464 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 23 | 242 | IPR027417 | - | |
Cma04g00975 | 464 | PRINTS | GTP-binding elongation factor signature | 34 | 47 | IPR000795 | GO:0003924|GO:0005525 | |
Cma04g00975 | 464 | PRINTS | GTP-binding elongation factor signature | 123 | 133 | IPR000795 | GO:0003924|GO:0005525 | |
Cma04g00975 | 464 | PRINTS | GTP-binding elongation factor signature | 139 | 150 | IPR000795 | GO:0003924|GO:0005525 | |
Cma04g00975 | 464 | PRINTS | GTP-binding elongation factor signature | 177 | 186 | IPR000795 | GO:0003924|GO:0005525 | |
Cma04g00975 | 464 | CDD | eIF2_gamma | 33 | 240 | IPR044128 | GO:0005525 | |
Cma04g00975 | 464 | Pfam | Elongation factor Tu domain 2 | 268 | 350 | IPR004161 | GO:0005525 | |
Cma04g00975 | 464 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER | 1 | 463 | - | - | |
Cma04g00975 | 464 | CDD | eIF2_gamma_III | 357 | 451 | IPR015256 | - | |
Cma04g00975 | 464 | SUPERFAMILY | Translation proteins | 240 | 354 | IPR009000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00975 | Cma-Chr4:5014292 | Cma17g01157 | Cma-Chr17:8042275 | 7.80E-15 | dispersed | |
Cma04g00009 | Cma-Chr4:48938 | Cma04g00975 | Cma-Chr4:5014292 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00975 | K03242 | - | csv:116403970 | 907.516 |