Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00975 ATGTCGCGGAAGGGTTTGATGGAACAAGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCACTTTCTCCTGAAGTTATATCTCGTCAGGCTACAATTAATATTGGTACTATTGGTCACGTGGCACATGGGAAGTCTACCGTTGTAAAAGCAATTTCAGGAGTCCAGACTGTACGTTTTAAGAATGAGCTGGAGCGTAACATTACCATTAAGCTGGGGTATGCCAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGGCCTATGAGCTACAAGGCGTATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCCTGGATTTGAAAATTGCAGAATGAAACTATTGCGACATGTATCCTTTGTCGACTGCCCGGGTCACGATATTCTTATGGCTACCATGCTTAACGGAGCAGCTATTATGGATGGAGCATTGCTTCTGATTGCTGCCAATGAAAGCTGCCCTCAACCTCAAACTTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAGGAAAATGTGGCAATCAATCAACATGAAGCTATTCAAAAATTTATTCAGGGAACCGTTGCTGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTCAAGTATAATATTGATGTTGTTTGCGAGTATATAGTGAAAAAAATTCCAATTCCAGAAAGGAACTTCGTCTCACCTCCTAATATGATCGTGATTCGTTCTTTTGATGTCAACAAACCCGGATTTGAAGTTGATGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCAGGGATTGTTGTTAAGGATGAAAGTGGTAACATTAAGTGCACTCCAATATACTCGAGGATTGTTTCATTGTATGCGGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTCATTGGGGTTGGCACAACTATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGTCAGGTTCTTGGGGAAGTTGGTTCACTTCCTGATGTTTTTGTTGAGCTAGAGGTAAACTTTTTCCTTTTGCGGCGGCTCCTGGGTGTCAGGACAAAAGGATCAGAAAGGCAGGGAAAAGTATCAAAGCTAGCCAAGGGGGAGATTCTAATGTTGAACATAGGATCCATGTCGACGGGAGCTAGAGTACTTGCAGTAAAGAACGATTTAGCAAAACTGCAGCTTACTTCCCCTGTTTGCACCAGCAAGGGGGAGAAGATTGCTCTAAGTCGTCGGGTCGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAAGTACTCTCGACGTCCCTCCCTGCCCCATTTGA 1395 43.66 MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMSYKAYGSGKEDSPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGSTLDVPPCPI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5014292 5019268 - CmaCh04G009750.1 Cma04g00975 292056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00975 464 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Cma04g00975 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Cma04g00975 464 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Cma04g00975 464 Gene3D - 30 240 IPR027417 -
Cma04g00975 464 Gene3D Translation factors 242 356 - -
Cma04g00975 464 Gene3D Translation factors 357 456 - -
Cma04g00975 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 463 - -
Cma04g00975 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Cma04g00975 464 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Cma04g00975 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Cma04g00975 464 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Cma04g00975 464 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Cma04g00975 464 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Cma04g00975 464 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Cma04g00975 464 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Cma04g00975 464 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Cma04g00975 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 463 - -
Cma04g00975 464 CDD eIF2_gamma_III 357 451 IPR015256 -
Cma04g00975 464 SUPERFAMILY Translation proteins 240 354 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00975 Cma-Chr4:5014292 Cma17g01157 Cma-Chr17:8042275 7.80E-15 dispersed
Cma04g00009 Cma-Chr4:48938 Cma04g00975 Cma-Chr4:5014292 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00975 K03242 - csv:116403970 907.516