Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00976 ATGGAGATTAGCAGCGTCGGCATGGATAATTCGGCGGTGACGGCGTTTTTGTTGACCGACGCAACCACTTGGTGGCAAGAAATAAACGATTCTCCCCTTTGGCAGGATCGTATCTTCTTAATCCTTGCTGCTCTCTATGGCGTCGTCGCCATCGTCGCTCTTATTCAACTAGTCCGTATACAGTTGAGGGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTCCATTTTCTCAATTTCTTGGTGAACGGAGCGCGAGCGGTCGTGTTTGTATTCCGTCGTGACGCTCAGAATTTGGAACCTCCGATTCTACGACATATCTTGCTTGACATGCCAAGCCTTGCCTTCTTCACAACTTATGCTCTATTGGTTCTGTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGACGGGTTGAGACCAACTTTCTTTACAGTAAATGCAGTTGTCTATGTAATTCAGATTGTTTTGTGGCTGATATTGTGGTGGAATCCTGTTCATGTACTGGCCATCCTTTCTAAGATGTTCTTTGCCAGTGTCTCTTTGTTCGCTGCCCTTGGCTTTCTTATTTATGGGGGAAGATTGTTCTTGATGTTACAGCGCTTCCCTGTGGAATCCAAAGGAAGACGGAAGAAGTTGCAAGAGGTCGGCTATGTGACGACTATATGTTTTTCATGTTTCCTAATCAGATGCATCATGATGTGTTTTAATGCTTTTGATCGAGCTGCTGACCTCGACGTTTTGGATCATCCGGTTCTAAATTTTATATACTACATGTTGGTTGAGATTTTACCTTCTTCTCTGGTCCTCTTCATTCTGAGAAAGCTGCCCCCGAAACGAGGAATCACGCAGTACCATCCTATCCGAGGAGGGCCTCAAGTTCTTGAAAGGCCACAACAATCTCTGCCTCAACCCCTATCTGCTGCAGAAGAGGAGGCTGTTAAGAGGAATACCGATTGTGTTTACTTTCTTGCTTCGCCTTTGACGTGTAAAAAGGGAAGTGAATGTGAGTATCGCCATAGTGAATATGCCCGGGTCAATCCTAGGGATTGCTGGTTCTGGTTGAACGGTAACTGCTTGAATCCAAAGTGTTCATTCCGTCATCCACCTCTTGATGGCTTGGTAGGAACTCCTCATTCAACAACTCCGAGTTCTCAAATTCCTTCCCAAACTTCAGCCATTCCATCCGCCCCTGTGAACTCAAGTAAACAAGCAGTCTCCTGCATTTTTTTTCAGAAGGGTCTATGTTTGAAAGGGGATCGATGTGCGTTCTTGCATGGGCCGTCCCCTGTTCCAACCAACAAAGTCCATCAGATGGCAACAAATGGCCAAGCGAGTGAACCACCAAGTGTGAAGAAAATTGCTGGGGGTACCCAGAGGAGCAATCAAGAGAAGAAGAATCCTCAAGAAATTTTTTTGAAGTCAGTTGGTGATGCATCTGTTAAGCTTGCAATGAAAGATGAAAGTGTGCCGTCAAAGATCGGAAACATCAATGAGAAGAGCAGACCACTTGCAAAAGTGGCCGATGGTGGTTCAAGGGGTAATCGTCTGCAACAGAGTCATGTAATTGATGATCATGGGTTACAGAATGGTAAGGATGCTGATGAGTTTTTGAAGGAGTCCTCTCCAGGTTTTGATGTTCTTGTTGATGATGAGCTGAGAGGCTCTGGTTATTATGGCAGTGAGGAACAATATGGGAGAACAAGAGGTCATGATGGAGCAAATATGATTTCTATGAATGATTATGACATCAGTCATTCTGCTGATTATAAGATGATGGCTAATGTTGATCATGATGTTTATAATGATGTAACTGACTATGATTATGACACTAGGAAGGGGCAGTATGGTTGGGACCAGCGTTGGACCTCGTCTGAGAAGCTGTCTTTGGGGTCTGCCCAGATGGAAAGGAGGCTCTCCCGAAAATCTATCAGTCCTGAACATGTTCAGAATGTGGATTTACGTCATCGTTTAAACAAGCAGAGAAGGGGAAATGGTTTAAGATCTGTGATCAATAATGACAATGTTGCTAATCGCCCTGAAGAACGAAACTATAATGCTTCTAGGAGAGATTCTCACCCCTCTCAAGAAAGCTCCATGAGTAACCGTCTCCGAGGTAGAATAAAGCTCCCAAGGATACCATCACCAGTTAGTAGTAATGTGGGGCCAGAAAGAGATTTCAACCGGGGAAGACCGGGGGGAAGGTTGTCACCAGGAAGGTCACTTTCCTTGTCTTATCAGGAAAGCAATAGAGATGAAATGAAAGGCAGGCTGGAAGTAGATTATAACAACGAGCGTAGAAATTTCAATGGTCTTAATTCTGGGAGGGATGGAATGGATGAAACGTCTGACTTTGCTGCTCCAAAACGTCTGGCCGAGCTGAAAGGCGAAAAACACGTGGTTAGCAAGGAGAAGCAAACCCTTGGCAAAAGAAAAGGCTTCGATAATGATCAACCTGGAGTTGAACTGTCGTTTGAGGGACCAAAGTCTCTCAGTGAGATTCTTAGAAAGAAGAGACAAGTTAAATCAGCTGTTGATCTTCCTATGAATAATGCCGAAAGAGAAAGCAGTGAAAGATTAAAAGAACGCTCCAGTATTCCCTCCGTGGAGCAAGGTGGTCTGTCATCAACGAGCAAGCAAAAAGCAAATAGCCTTGAAGGAATCATGTCCGCTCCAGTTGAAACTTTTGGGAAAGAGGAAAACATCAACGTAACTCATCACAATTCTTCTCAGCCTATCCATTCAACCGATGATCACGGGATTGAAGCTTATGAAGAAACATTCGAGGACCCCGAGTACGAGGGAGATGATCTGAGAGATGGTGAATACGAGTACGAGGAAGTCGATGACAGAGAATACAATTATGAAGAAGGTGACAACGTAGTTCCTGAAGAAGAGTATATGGACGATGAAGACGGAGATGACTTTGCCAAGAAGATCGGCGTTATGTCATGA 2964 44.7 MEISSVGMDNSAVTAFLLTDATTWWQEINDSPLWQDRIFLILAALYGVVAIVALIQLVRIQLRVPEYGWTTQKVFHFLNFLVNGARAVVFVFRRDAQNLEPPILRHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPTFFTVNAVVYVIQIVLWLILWWNPVHVLAILSKMFFASVSLFAALGFLIYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCIMMCFNAFDRAADLDVLDHPVLNFIYYMLVEILPSSLVLFILRKLPPKRGITQYHPIRGGPQVLERPQQSLPQPLSAAEEEAVKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWFWLNGNCLNPKCSFRHPPLDGLVGTPHSTTPSSQIPSQTSAIPSAPVNSSKQAVSCIFFQKGLCLKGDRCAFLHGPSPVPTNKVHQMATNGQASEPPSVKKIAGGTQRSNQEKKNPQEIFLKSVGDASVKLAMKDESVPSKIGNINEKSRPLAKVADGGSRGNRLQQSHVIDDHGLQNGKDADEFLKESSPGFDVLVDDELRGSGYYGSEEQYGRTRGHDGANMISMNDYDISHSADYKMMANVDHDVYNDVTDYDYDTRKGQYGWDQRWTSSEKLSLGSAQMERRLSRKSISPEHVQNVDLRHRLNKQRRGNGLRSVINNDNVANRPEERNYNASRRDSHPSQESSMSNRLRGRIKLPRIPSPVSSNVGPERDFNRGRPGGRLSPGRSLSLSYQESNRDEMKGRLEVDYNNERRNFNGLNSGRDGMDETSDFAAPKRLAELKGEKHVVSKEKQTLGKRKGFDNDQPGVELSFEGPKSLSEILRKKRQVKSAVDLPMNNAERESSERLKERSSIPSVEQGGLSSTSKQKANSLEGIMSAPVETFGKEENINVTHHNSSQPIHSTDDHGIEAYEETFEDPEYEGDDLRDGEYEYEEVDDREYNYEEGDNVVPEEEYMDDEDGDDFAKKIGVMS 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5020393 5033633 - CmaCh04G009760.1 Cma04g00976 292057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00976 987 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Cma04g00976 987 SMART c3hfinal6 318 345 IPR000571 GO:0046872
Cma04g00976 987 SMART c3hfinal6 350 373 IPR000571 GO:0046872
Cma04g00976 987 SMART c3hfinal6 405 431 IPR000571 GO:0046872
Cma04g00976 987 Pfam Zinc-finger containing family 318 372 IPR041686 -
Cma04g00976 987 SUPERFAMILY CCCH zinc finger 406 430 IPR036855 GO:0046872
Cma04g00976 987 MobiDBLite consensus disorder prediction 843 886 - -
Cma04g00976 987 MobiDBLite consensus disorder prediction 458 472 - -
Cma04g00976 987 MobiDBLite consensus disorder prediction 805 820 - -
Cma04g00976 987 MobiDBLite consensus disorder prediction 959 978 - -
Cma04g00976 987 Gene3D - 401 459 - -
Cma04g00976 987 MobiDBLite consensus disorder prediction 660 759 - -
Cma04g00976 987 ProSiteProfiles Zinc finger C3H1-type profile. 348 374 IPR000571 GO:0046872
Cma04g00976 987 MobiDBLite consensus disorder prediction 959 975 - -
Cma04g00976 987 MobiDBLite consensus disorder prediction 805 828 - -
Cma04g00976 987 Gene3D - 310 374 - -
Cma04g00976 987 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 306 987 - -
Cma04g00976 987 MobiDBLite consensus disorder prediction 444 472 - -
Cma04g00976 987 Pfam RNA-binding, Nab2-type zinc finger 411 430 - -
Cma04g00976 987 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 306 987 - -
Cma04g00976 987 MobiDBLite consensus disorder prediction 668 685 - -
Cma04g00976 987 ProSiteProfiles Zinc finger C3H1-type profile. 405 432 IPR000571 GO:0046872
Cma04g00976 987 MobiDBLite consensus disorder prediction 871 886 - -
Cma04g00976 987 Pfam THH1/TOM1/TOM3 domain 21 292 IPR009457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00976 - - - csv:116403891 1047.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00003 Cma-Chr4:14204 Cma04g00976 Cma-Chr4:5020393 0 dispersed
Cma04g00004 Cma-Chr4:21953 Cma04g00976 Cma-Chr4:5020393 0 dispersed
Cma04g00976 Cma-Chr4:5020393 Cma18g00249 Cma-Chr18:1318386 6.44E-116 dispersed
Cma04g00976 Cma-Chr4:5020393 Cma13g00730 Cma-Chr13:6482172 2.06E-118 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1079 . . . . . . . . Cmo04g01052 . Cma04g00976 . Car04g00917 . . . . Bhi07g00087 . . . . . . . . . . . . . . . . . . . . Cme10g01362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00958 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012053 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34827 PF06454 DUF1084 9.50E-144 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00976 Cma_Chr04 FPKM 20.671843 24.210865 20.17808 20.702841 19.730024 19.095537 18.701387 26.651131 25.724159 26.423822